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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:99.7 nTPM
HPA:99.7 nTPM
GTEx:83.5 nTPM
FANTOM5:82.9 Scaled Tags Per Million
Pig:75.7 nTPM
Mouse:121.8 nTPM
Allen mouse:6.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 99.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.3
2586 Male, age 75, left hemisphere 104.8
1870 Female, age 42, unknown 98.9
2019 Male, age 18, unknown 98.7
2666 Male, age 74, left hemisphere 97.9
2828 Female, age 72, unknown 97.0
1833 Male, age 53, unknown 96.4
1830 Male, age 51, unknown 95.8
1827 Male, age 72, unknown 94.2
2411 Female, age 72, unknown 93.6
2219 Male, age 76, both hemispheres 85.7
Dorsal raphe nucleus
nTPM: 95.8
2016 Female, age 72, unknown 103.6
1828 Male, age 53, unknown 97.2
2298 Female, age 72, unknown 96.4
2750 Male, age 76, both hemispheres 91.5
2047 Male, age 72, unknown 90.5
Inferior colliculus
nTPM: 95.8
2849 Male, age 72, unknown 97.6
1890 Male, age 53, unknown 96.2
2097 Female, age 72, unknown 94.7
1848 Female, age 42, unknown 94.6
Median raphe nucleus
nTPM: 88.2
2220 Male, age 76, midline 88.2
Pedunculopontine tegmental nucleus
nTPM: 90.5
2334 Male, age 80, both hemispheres 91.9
1921 Female, age 85, both hemispheres 90.4
2338 Male, age 61, both hemispheres 89.0
Periaquaductal grey, anterior
nTPM: 94.6
2502 Female, age 75, unknown 95.3
1795 Male, age 51, unknown 95.2
1947 Male, age 18, unknown 93.2
Periaquaductal grey, dorsal
nTPM: 99.7
2850 Male, age 76, both hemispheres 111.5
1840 Male, age 53, unknown 97.5
1831 Male, age 72, unknown 96.0
2464 Female, age 72, unknown 93.9
Periaquaductal grey, lateral
nTPM: 98.0
2140 Male, age 76, both hemispheres 101.7
2272 Male, age 74, both hemispheres 98.2
2053 Male, age 18, unknown 94.2
Pretectal area
nTPM: 94.0
1817 Female, age 42, unknown 97.0
1815 Male, age 53, unknown 96.6
2273 Male, age 74, both hemispheres 95.2
2825 Male, age 18, unknown 95.1
2316 Male, age 76, right hemisphere 94.9
2667 Female, age 75, unknown 93.9
1816 Male, age 51, unknown 93.4
2007 Male, age 72, unknown 93.3
2407 Male, age 75, both hemispheres 92.2
2224 Female, age 72, unknown 91.2
1944 Female, age 72, unknown 90.9
Red nucleus
nTPM: 98.6
2227 Male, age 72, unknown 101.8
2769 Male, age 72, unknown 100.9
2785 Male, age 18, unknown 100.2
1865 Male, age 51, unknown 99.8
1954 Female, age 42, unknown 99.6
1821 Female, age 72, unknown 99.4
1904 Male, age 53, unknown 99.0
2588 Male, age 74, left hemisphere 97.8
2823 Male, age 76, right hemisphere 96.7
2725 Female, age 75, unknown 96.1
2584 Male, age 75, left hemisphere 95.9
2503 Female, age 72, unknown 95.6
Substantia nigra
nTPM: 91.8
2583 Male, age 75, right hemisphere 97.2
2699 Male, age 18, unknown 94.9
1889 Female, age 72, unknown 93.4
1851 Male, age 51, unknown 93.2
2590 Female, age 75, unknown 91.7
2665 Male, age 74, both hemispheres 91.2
1916 Female, age 42, unknown 90.7
1941 Male, age 53, unknown 89.4
2409 Female, age 72, unknown 88.9
2241 Male, age 72, unknown 87.7
Superior colliculus
nTPM: 96.4
1995 Male, age 72, unknown 106.7
1913 Female, age 42, unknown 100.6
2664 Male, age 75, both hemispheres 99.9
2668 Female, age 75, unknown 97.7
2587 Male, age 74, left hemisphere 94.7
1895 Male, age 76, right hemisphere 93.9
1839 Male, age 51, unknown 93.7
1796 Male, age 53, unknown 93.2
2261 Male, age 18, unknown 92.4
2087 Female, age 72, unknown 91.0
Ventral tegmental area
nTPM: 92.7
2223 Female, age 72, unknown 94.8
2021 Male, age 53, unknown 94.0
2410 Female, age 72, unknown 93.4
1915 Female, age 42, unknown 93.2
1942 Male, age 51, unknown 92.3
2218 Male, age 76, both hemispheres 88.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.5
Samples: 139

Max nTPM: 131.8
Min nTPM: 48.4
Std nTPM: 18.4
Median nTPM: 82.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 131.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 126.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 126.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 124.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 124.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 123.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 120.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 116.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 110.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 109.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 109.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.9
FF:10158-103A5 76 years, female 82.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.7
Pig sample Sample description nTPM
Midbrain
nTPM: 75.7
Samples: 4

Max nTPM: 113.4
Min nTPM: 61.5
Sample A Female 113.4
Sample B Female 61.5
Sample C Male 66.3
Sample D Male 61.5
Periaqueductal gray
nTPM: 55.8
Samples: 3

Max nTPM: 57.1
Min nTPM: 54.9
Sample B Female 55.3
Sample C Male 57.1
Sample D Male 54.9
Substantia nigra
nTPM: 63.0
Samples: 4

Max nTPM: 78.0
Min nTPM: 49.2
Sample A Female 66.4
Sample B Female 49.2
Sample C Male 58.3
Sample D Male 78.0
Superior colliculi
nTPM: 72.8
Samples: 4

Max nTPM: 78.3
Min nTPM: 61.5
Sample A Female 78.3
Sample B Female 61.5
Sample C Male 73.8
Sample D Male 77.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 121.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 121.8
Samples: 4

Max nTPM: 128.2
Min nTPM: 117.1
Sample A Male 122.0
Sample B Male 117.1
Sample C Female 128.2
Sample D Female 119.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
2285 Antisense, RP_040507_01_D06, Mouse strain C57BL/6J (56 days, male) 6.0
2286 Antisense, RP_040507_01_D06, Mouse strain C57BL/6J (56 days, male) 5.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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