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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		79.959
RNA expressioni
Consensus:30.3 nTPM
HPA:30.3 nTPM
GTEx:46.9 nTPM
FANTOM5:97.0 Scaled Tags Per Million
Pig:33.3 nTPM
Mouse:62.0 nTPM
Allen mouse:6.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA045168Antibody CAB000147Antibody CAB003839Antibody CAB003840Antibody CAB075726Antibody CAB075727
Glial cells HighNot detectedNot detectedNot detectedHighHigh
Neuronal cells MediumNot detectedNot detectedHighHighHigh












HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA045168
Hippocampal formation mean intensity 79.959
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 15.109
Molecular layer of the dentate gyrus 7.898
Granular dentate gyrus 79.959
CA1 - oriens layer 5.915
CA1 - pyramidal layer 57.345
CA1 - radiatum layer 5.681
CA2 - oriens layer 7.653
CA2 - pyramidal layer 46.269
CA2 - radiatum layer 9.394
CA3 - oriens layer 8.753
CA3 - pyramidal layer 49.024
CA3 - radiatum layer 9.325
Stratum lucidum 9.344
Lacunosum moleculare 4.218
Subiculum 15.473

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.3
Sample id Sample description nTPM
Hippocampus
nTPM: 28.5
2529 Female, age 94, left hemisphere 32.0
1898 Male, age 80, left hemisphere 31.2
1911 Female, age 85, right hemisphere 28.1
2621 Female, age 67, right hemisphere 27.7
2148 Female, age 91, left hemisphere 27.3
1855 Male, age 76, left hemisphere 25.0
Dentate gyrus
nTPM: 26.8
2530 Female, age 94, left hemisphere 30.8
2010 Male, age 76, both hemispheres 29.0
2246 Female, age 85, both hemispheres 28.3
2528 Male, age 74, both hemispheres 28.1
1927 Female, age 91, both hemispheres 23.0
2531 Female, age 67, both hemispheres 21.6
Entorhinal gyrus
nTPM: 26.7
2117 Female, age 91, right hemisphere 36.2
2764 Male, age 80, right hemisphere 27.8
1938 Female, age 85, left hemisphere 27.2
1787 Male, age 76, left hemisphere 25.4
2686 Male, age 75, right hemisphere 22.8
2613 Female, age 94, left hemisphere 20.5
Hippocampus, CA1
nTPM: 30.3
2749 Male, age 80, left hemisphere 43.4
2527 Male, age 74, both hemispheres 33.3
1873 Female, age 85, both hemispheres 30.9
2082 Female, age 91, right hemisphere 24.2
2045 Male, age 76, both hemispheres 19.7
Hippocampus, CA2
nTPM: 29.2
1963 Male, age 80, left hemisphere 34.5
2249 Male, age 74, both hemispheres 31.3
1892 Male, age 76, both hemispheres 28.5
1940 Female, age 85, left hemisphere 28.2
2113 Female, age 91, right hemisphere 26.3
2437 Female, age 94, left hemisphere 26.1
Hippocampus, CA3
nTPM: 25.5
2137 Male, age 80, left hemisphere 29.6
1891 Female, age 85, both hemispheres 29.1
2436 Male, age 74, both hemispheres 27.0
1867 Male, age 76, both hemispheres 25.9
2620 Female, age 94, left hemisphere 20.8
2861 Female, age 67, both hemispheres 20.8
Parahippocampal cortex
nTPM: 25.7
2250 Female, age 67, right hemisphere 28.1
2532 Female, age 72, left hemisphere 28.1
1933 Female, age 85, both hemispheres 27.7
2692 Male, age 74, both hemispheres 27.3
2245 Female, age 91, both hemispheres 27.1
1850 Male, age 80, both hemispheres 26.6
1990 Female, age 91, right hemisphere 26.6
2622 Female, age 67, right hemisphere 23.3
2018 Male, age 76, both hemispheres 21.5
2693 Female, age 94, both hemispheres 20.1
Perirhinal gyrus
nTPM: 26.0
1794 Male, age 80, right hemisphere 28.7
1841 Female, age 85, right hemisphere 27.8
2521 Female, age 94, right hemisphere 26.2
1847 Female, age 91, left hemisphere 25.0
2848 Male, age 76, right hemisphere 22.5
Subiculum
nTPM: 29.4
1901 Male, age 80, both hemispheres 31.4
2042 Male, age 76, both hemispheres 29.5
2438 Female, age 94, left hemisphere 29.5
1977 Female, age 85, both hemispheres 29.2
2619 Male, age 74, both hemispheres 29.2
2729 Female, age 91, right hemisphere 27.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 46.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 46.9
Samples: 197

Max nTPM: 77.3
Min nTPM: 19.4
Std nTPM: 8.7
Median nTPM: 46.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 77.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 69.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 67.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 63.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 62.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 62.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 62.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 61.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 61.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 61.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 61.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 97.0
FF:10153-102I9 76 years, female 113.5
FF:10169-103B7 60 years, female 80.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 33.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.4
Samples: 4

Max nTPM: 37.1
Min nTPM: 24.7
Sample A Female 37.1
Sample B Female 29.3
Sample C Male 30.6
Sample D Male 24.7
Entorhinal cortex
nTPM: 30.6
Samples: 4

Max nTPM: 32.6
Min nTPM: 26.7
Sample A Female 31.8
Sample B Female 32.6
Sample C Male 31.1
Sample D Male 26.7
Subiculum
nTPM: 33.3
Samples: 4

Max nTPM: 39.3
Min nTPM: 29.8
Sample A Female 39.3
Sample B Female 31.7
Sample C Male 32.4
Sample D Male 29.8
Ventral hippocampus
nTPM: 32.1
Samples: 4

Max nTPM: 39.6
Min nTPM: 25.8
Sample A Female 31.7
Sample B Female 25.8
Sample C Male 39.6
Sample D Male 31.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 62.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 37.1
Samples: 4

Max nTPM: 39.0
Min nTPM: 35.1
Sample A Male 37.7
Sample B Male 35.1
Sample C Female 39.0
Sample D Female 36.5
Hippocampal formation
nTPM: 62.0
Samples: 4

Max nTPM: 72.1
Min nTPM: 54.0
Sample A Male 54.0
Sample B Male 64.5
Sample C Female 72.1
Sample D Female 57.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.3
70429154 Antisense, RP_050614_01_B02, Mouse strain C57BL/6J (56 days, male) 6.3

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The Human Protein Atlas

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