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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:42.4 nTPM
HPA:42.4 nTPM
GTEx:38.5 nTPM
FANTOM5:215.5 Scaled Tags Per Million
Pig:60.0 nTPM
Mouse:46.7 nTPM
Allen mouse:11.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA030751Antibody HPA030752Antibody HPA030754Antibody CAB034099
Glial cells LowNot detectedLowLow
Neuronal cells MediumNot detectedHighMedium







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.1
1857 Female, age 85, left hemisphere 47.3
1854 Male, age 80, left hemisphere 45.7
2290 Female, age 72, unknown 43.7
2846 Female, age 79, unknown 42.5
1781 Male, age 74, unknown 38.9
2289 Male, age 61, right hemisphere 38.3
2481 Female, age 94, left hemisphere 36.3
2288 Male, age 75, left hemisphere 35.8
Claustrum
nTPM: 41.4
2392 Female, age 94, both hemispheres 48.7
2568 Male, age 61, both hemispheres 44.7
1956 Male, age 74, unknown 42.9
2491 Male, age 75, both hemispheres 42.6
2645 Female, age 72, unknown 42.0
2196 Female, age 79, unknown 39.5
2284 Female, age 91, both hemispheres 39.1
2198 Male, age 80, both hemispheres 37.0
2292 Female, age 85, both hemispheres 35.7
Globus pallidus, externus
nTPM: 34.6
2395 Male, age 75, both hemispheres 38.0
2567 Female, age 72, unknown 36.5
1996 Male, age 80, right hemisphere 33.2
2772 Female, age 79, unknown 33.2
2646 Male, age 61, right hemisphere 32.0
Globus pallidus, internus
nTPM: 35.9
2566 Female, age 72, unknown 37.4
2287 Male, age 75, right hemisphere 36.9
2483 Female, age 94, right hemisphere 36.4
2778 Female, age 91, both hemispheres 36.0
2111 Female, age 85, right hemisphere 35.2
1818 Male, age 74, unknown 34.9
2037 Male, age 80, right hemisphere 34.7
Nucleus accumbens
nTPM: 41.1
1856 Female, age 91, right hemisphere 46.2
2391 Female, age 94, left hemisphere 43.9
1783 Male, age 74, unknown 42.2
1806 Female, age 85, left hemisphere 40.8
2824 Male, age 61, right hemisphere 40.1
2286 Male, age 75, left hemisphere 39.6
2698 Female, age 72, unknown 39.2
2732 Male, age 80, right hemisphere 37.2
Nucleus basalis of Meynert
nTPM: 37.3
2393 Male, age 80, right hemisphere 41.3
2484 Female, age 94, left hemisphere 38.6
2821 Male, age 75, both hemispheres 38.4
2569 Male, age 61, both hemispheres 31.0
Nucleus of the diagonal band
nTPM: 41.6
2029 Male, age 61, right hemisphere 45.0
1812 Female, age 91, both hemispheres 42.5
2195 Female, age 85, both hemispheres 41.9
2775 Male, age 80, right hemisphere 40.5
1979 Male, age 74, unknown 38.3
Olfactory tubercle
nTPM: 42.4
2487 Female, age 94, left hemisphere 43.3
1846 Male, age 80, right hemisphere 42.6
2856 Male, age 75, right hemisphere 42.0
1998 Female, age 91, both hemispheres 41.5
Putamen
nTPM: 41.5
1937 Female, age 91, right hemisphere 46.1
1838 Male, age 80, right hemisphere 45.5
2466 Female, age 79, unknown 44.7
1829 Male, age 74, unknown 43.1
2489 Female, age 72, unknown 38.8
2482 Female, age 94, left hemisphere 37.7
2647 Male, age 75, left hemisphere 34.8
Septal nuclei
nTPM: 41.1
2031 Female, age 72, unknown 45.5
1960 Male, age 74, unknown 43.6
2629 Female, age 94, right hemisphere 42.9
2059 Female, age 85, both hemispheres 41.5
2009 Female, age 91, both hemispheres 40.4
2394 Male, age 61, left hemisphere 38.2
2199 Male, age 80, right hemisphere 36.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.5
Samples: 246

Max nTPM: 79.4
Min nTPM: 13.3
Std nTPM: 9.3
Median nTPM: 38.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 79.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 66.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 64.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 63.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 60.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 59.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 58.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 57.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 57.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 56.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 56.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.1
Samples: 246

Max nTPM: 72.1
Min nTPM: 12.9
Std nTPM: 8.3
Median nTPM: 37.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 72.1
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 57.0
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 54.6
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 53.3
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 52.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 52.0
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 52.0
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 51.9
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 51.9
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 51.4
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 50.9
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Brain - Putamen (basal ganglia)
Average nTPM: 35.2
Samples: 205

Max nTPM: 74.1
Min nTPM: 13.0
Std nTPM: 8.9
Median nTPM: 34.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 74.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 63.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 59.6
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 57.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 55.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 53.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 53.6
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 53.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 52.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 51.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 51.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 215.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 215.5
FF:10164-103B2 76 years, female 215.5
Globus pallidus
Scaled Tags Per Million: 173.8
FF:10161-103A8 76 years, female 195.3
FF:10175-103C4 60 years, female 152.3
Nucleus accumbens
Scaled Tags Per Million: 172.9
FF:10037-101F1 23-56 years, mixed 172.9
Putamen
Scaled Tags Per Million: 210.5
FF:10176-103C5 60 years, female 210.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 60.0
Pig sample Sample description nTPM
Caudate
nTPM: 58.7
Samples: 4

Max nTPM: 60.6
Min nTPM: 55.5
Sample A Female 59.3
Sample B Female 59.3
Sample C Male 55.5
Sample D Male 60.6
Putamen
nTPM: 60.0
Samples: 4

Max nTPM: 70.5
Min nTPM: 49.8
Sample A Female 49.8
Sample B Female 61.7
Sample C Male 70.5
Sample D Male 58.1
Septum
nTPM: 55.5
Samples: 4

Max nTPM: 61.8
Min nTPM: 49.1
Sample A Female 54.2
Sample B Female 61.8
Sample C Male 49.1
Sample D Male 56.9
Ventral pallidum
nTPM: 56.5
Samples: 4

Max nTPM: 60.9
Min nTPM: 45.0
Sample A Female 60.9
Sample B Female 60.3
Sample C Male 45.0
Sample D Male 59.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 46.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 46.7
Samples: 4

Max nTPM: 50.4
Min nTPM: 45.2
Sample A Male 45.2
Sample B Male 45.2
Sample C Female 50.4
Sample D Female 46.1
Septum
nTPM: 28.0
Samples: 4

Max nTPM: 30.1
Min nTPM: 26.4
Sample A Male 26.4
Sample B Male 30.1
Sample C Female 26.6
Sample D Female 29.0
Ventral forebrain
nTPM: 39.8
Samples: 4

Max nTPM: 43.6
Min nTPM: 35.7
Sample A Male 41.8
Sample B Male 37.9
Sample C Female 35.7
Sample D Female 43.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.6
759 Antisense, RP_Baylor_103330, Mouse strain C57BL/6J (56 days, male) 11.6
758 Antisense, RP_Baylor_103330, Mouse strain C57BL/6J (56 days, male) 10.9
Pallidum
Expression energy: 9.7
759 Antisense, RP_Baylor_103330, Mouse strain C57BL/6J (56 days, male) 9.7
758 Antisense, RP_Baylor_103330, Mouse strain C57BL/6J (56 days, male) 7.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.