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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:43.9 nTPM
HPA:43.9 nTPM
GTEx:33.9 nTPM
FANTOM5:190.0 Scaled Tags Per Million
Pig:62.6 nTPM
Mouse:52.9 nTPM
Allen mouse:11.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030751Antibody HPA030752Antibody HPA030754Antibody CAB034099
Glial cells Not detectedNot detectedNot detectedLow
Neuronal cells MediumNot detectedHighMedium









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 43.9
Sample id Sample description nTPM
Hippocampus
nTPM: 40.3
1855 Male, age 76, left hemisphere 42.0
1898 Male, age 80, left hemisphere 42.0
2621 Female, age 67, right hemisphere 41.4
2148 Female, age 91, left hemisphere 41.2
1911 Female, age 85, right hemisphere 39.1
2529 Female, age 94, left hemisphere 36.0
Dentate gyrus
nTPM: 40.3
1927 Female, age 91, both hemispheres 44.1
2531 Female, age 67, both hemispheres 43.2
2010 Male, age 76, both hemispheres 43.0
2528 Male, age 74, both hemispheres 39.9
2246 Female, age 85, both hemispheres 38.6
2530 Female, age 94, left hemisphere 33.2
Entorhinal gyrus
nTPM: 39.3
2764 Male, age 80, right hemisphere 41.8
1938 Female, age 85, left hemisphere 41.5
2613 Female, age 94, left hemisphere 39.9
1787 Male, age 76, left hemisphere 37.7
2117 Female, age 91, right hemisphere 37.4
2686 Male, age 75, right hemisphere 37.3
Hippocampus, CA1
nTPM: 43.8
2749 Male, age 80, left hemisphere 51.2
2045 Male, age 76, both hemispheres 47.7
1873 Female, age 85, both hemispheres 43.2
2082 Female, age 91, right hemisphere 39.4
2527 Male, age 74, both hemispheres 37.6
Hippocampus, CA2
nTPM: 39.4
1892 Male, age 76, both hemispheres 47.7
1963 Male, age 80, left hemisphere 40.5
1940 Female, age 85, left hemisphere 40.4
2113 Female, age 91, right hemisphere 37.0
2249 Male, age 74, both hemispheres 36.4
2437 Female, age 94, left hemisphere 34.3
Hippocampus, CA3
nTPM: 43.0
1867 Male, age 76, both hemispheres 50.1
2137 Male, age 80, left hemisphere 46.6
2620 Female, age 94, left hemisphere 42.9
1891 Female, age 85, both hemispheres 41.4
2436 Male, age 74, both hemispheres 39.4
2861 Female, age 67, both hemispheres 37.6
Parahippocampal cortex
nTPM: 41.5
1850 Male, age 80, both hemispheres 44.8
2693 Female, age 94, both hemispheres 44.8
2018 Male, age 76, both hemispheres 44.1
2622 Female, age 67, right hemisphere 42.4
1933 Female, age 85, both hemispheres 42.3
2532 Female, age 72, left hemisphere 40.8
2245 Female, age 91, both hemispheres 40.3
2250 Female, age 67, right hemisphere 39.8
1990 Female, age 91, right hemisphere 38.4
2692 Male, age 74, both hemispheres 37.5
Perirhinal gyrus
nTPM: 43.9
1841 Female, age 85, right hemisphere 50.2
1794 Male, age 80, right hemisphere 43.3
2521 Female, age 94, right hemisphere 42.7
1847 Female, age 91, left hemisphere 42.6
2848 Male, age 76, right hemisphere 40.5
Subiculum
nTPM: 38.9
2042 Male, age 76, both hemispheres 41.0
2729 Female, age 91, right hemisphere 40.9
1901 Male, age 80, both hemispheres 39.9
1977 Female, age 85, both hemispheres 39.0
2619 Male, age 74, both hemispheres 36.7
2438 Female, age 94, left hemisphere 35.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.9
Samples: 197

Max nTPM: 58.9
Min nTPM: 15.6
Std nTPM: 7.3
Median nTPM: 32.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 58.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 57.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 54.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 54.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 51.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 49.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 47.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 47.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 47.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 46.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 45.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 190.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 190.0
FF:10169-103B7 60 years, female 191.4
FF:10153-102I9 76 years, female 188.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 62.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 62.6
Samples: 4

Max nTPM: 76.7
Min nTPM: 54.3
Sample A Female 54.3
Sample B Female 63.7
Sample C Male 55.6
Sample D Male 76.7
Entorhinal cortex
nTPM: 57.0
Samples: 4

Max nTPM: 59.1
Min nTPM: 55.4
Sample A Female 55.4
Sample B Female 59.1
Sample C Male 57.4
Sample D Male 56.0
Subiculum
nTPM: 57.0
Samples: 4

Max nTPM: 59.1
Min nTPM: 54.7
Sample A Female 54.7
Sample B Female 58.2
Sample C Male 55.9
Sample D Male 59.1
Ventral hippocampus
nTPM: 57.6
Samples: 4

Max nTPM: 61.9
Min nTPM: 49.2
Sample A Female 61.9
Sample B Female 60.9
Sample C Male 49.2
Sample D Male 58.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 52.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 51.2
Samples: 4

Max nTPM: 61.2
Min nTPM: 43.4
Sample A Male 48.4
Sample B Male 61.2
Sample C Female 51.6
Sample D Female 43.4
Hippocampal formation
nTPM: 52.9
Samples: 4

Max nTPM: 59.0
Min nTPM: 47.3
Sample A Male 56.7
Sample B Male 59.0
Sample C Female 47.3
Sample D Female 48.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.4
759 Antisense, RP_Baylor_103330, Mouse strain C57BL/6J (56 days, male) 11.4
758 Antisense, RP_Baylor_103330, Mouse strain C57BL/6J (56 days, male) 8.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.