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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		49.083
RNA expressioni
Consensus:64.4 nTPM
HPA:64.4 nTPM
GTEx:47.7 nTPM
FANTOM5:311.4 Scaled Tags Per Million
Pig:123.1 nTPM
Mouse:137.1 nTPM
Allen mouse:9.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021307Antibody CAB072341
Glial cells Not detectedNot detected
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA021307
Hippocampal formation mean intensity 49.083
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 29.888
Molecular layer of the dentate gyrus 32.666
Granular dentate gyrus 26.353
CA1 - oriens layer 24.796
CA1 - pyramidal layer 22.045
CA1 - radiatum layer 31.113
CA2 - oriens layer 41.873
CA2 - pyramidal layer 38.010
CA2 - radiatum layer 45.432
CA3 - oriens layer 49.083
CA3 - pyramidal layer 35.839
CA3 - radiatum layer 46.050
Stratum lucidum 33.118
Lacunosum moleculare 15.754
Subiculum 19.137

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.4
Sample id Sample description nTPM
Hippocampus
nTPM: 45.2
1855 Male, age 76, left hemisphere 59.1
1911 Female, age 85, right hemisphere 58.7
1898 Male, age 80, left hemisphere 54.8
2621 Female, age 67, right hemisphere 50.7
2148 Female, age 91, left hemisphere 39.9
2529 Female, age 94, left hemisphere 7.9
Dentate gyrus
nTPM: 47.6
1927 Female, age 91, both hemispheres 77.7
2531 Female, age 67, both hemispheres 61.5
2010 Male, age 76, both hemispheres 56.1
2246 Female, age 85, both hemispheres 47.4
2530 Female, age 94, left hemisphere 25.6
2528 Male, age 74, both hemispheres 17.2
Entorhinal gyrus
nTPM: 40.0
2613 Female, age 94, left hemisphere 58.8
1938 Female, age 85, left hemisphere 55.2
2764 Male, age 80, right hemisphere 45.5
1787 Male, age 76, left hemisphere 44.1
2686 Male, age 75, right hemisphere 19.0
2117 Female, age 91, right hemisphere 17.3
Hippocampus, CA1
nTPM: 64.4
2749 Male, age 80, left hemisphere 120.2
1873 Female, age 85, both hemispheres 79.3
2045 Male, age 76, both hemispheres 72.1
2527 Male, age 74, both hemispheres 30.0
2082 Female, age 91, right hemisphere 20.5
Hippocampus, CA2
nTPM: 42.5
1963 Male, age 80, left hemisphere 107.0
1892 Male, age 76, both hemispheres 83.0
2113 Female, age 91, right hemisphere 24.9
2437 Female, age 94, left hemisphere 22.0
2249 Male, age 74, both hemispheres 14.6
1940 Female, age 85, left hemisphere 3.2
Hippocampus, CA3
nTPM: 58.8
2137 Male, age 80, left hemisphere 133.4
2620 Female, age 94, left hemisphere 75.2
1867 Male, age 76, both hemispheres 55.9
1891 Female, age 85, both hemispheres 52.6
2861 Female, age 67, both hemispheres 34.1
2436 Male, age 74, both hemispheres 2.0
Parahippocampal cortex
nTPM: 33.6
2693 Female, age 94, both hemispheres 62.9
2245 Female, age 91, both hemispheres 56.4
1850 Male, age 80, both hemispheres 48.3
1933 Female, age 85, both hemispheres 42.7
2532 Female, age 72, left hemisphere 33.4
2250 Female, age 67, right hemisphere 27.8
1990 Female, age 91, right hemisphere 25.6
2018 Male, age 76, both hemispheres 20.5
2692 Male, age 74, both hemispheres 13.1
2622 Female, age 67, right hemisphere 4.9
Perirhinal gyrus
nTPM: 55.3
2521 Female, age 94, right hemisphere 70.8
2848 Male, age 76, right hemisphere 60.8
1847 Female, age 91, left hemisphere 54.2
1841 Female, age 85, right hemisphere 46.0
1794 Male, age 80, right hemisphere 44.9
Subiculum
nTPM: 30.2
1901 Male, age 80, both hemispheres 68.4
1977 Female, age 85, both hemispheres 45.6
2042 Male, age 76, both hemispheres 23.8
2438 Female, age 94, left hemisphere 19.2
2729 Female, age 91, right hemisphere 19.1
2619 Male, age 74, both hemispheres 5.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 47.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 47.7
Samples: 197

Max nTPM: 99.9
Min nTPM: 9.9
Std nTPM: 18.5
Median nTPM: 44.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 99.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 94.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 94.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 92.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 89.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 89.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 86.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 84.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 83.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 81.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 80.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 311.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 311.4
FF:10169-103B7 60 years, female 345.2
FF:10153-102I9 76 years, female 277.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 123.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 123.2
Samples: 4

Max nTPM: 145.6
Min nTPM: 101.8
Sample A Female 145.6
Sample B Female 130.4
Sample C Male 114.8
Sample D Male 101.8
Entorhinal cortex
nTPM: 120.0
Samples: 4

Max nTPM: 123.3
Min nTPM: 115.4
Sample A Female 115.4
Sample B Female 123.3
Sample C Male 119.7
Sample D Male 121.6
Subiculum
nTPM: 100.3
Samples: 4

Max nTPM: 128.5
Min nTPM: 79.3
Sample A Female 128.5
Sample B Female 100.6
Sample C Male 92.9
Sample D Male 79.3
Ventral hippocampus
nTPM: 110.4
Samples: 4

Max nTPM: 149.0
Min nTPM: 92.0
Sample A Female 106.6
Sample B Female 92.0
Sample C Male 94.0
Sample D Male 149.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 137.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 137.2
Samples: 4

Max nTPM: 149.1
Min nTPM: 131.2
Sample A Male 132.1
Sample B Male 136.2
Sample C Female 131.2
Sample D Female 149.1
Hippocampal formation
nTPM: 104.6
Samples: 4

Max nTPM: 117.8
Min nTPM: 95.5
Sample A Male 117.8
Sample B Male 105.0
Sample C Female 100.1
Sample D Female 95.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.0
73817444 Antisense, RP_051101_01_B08, Mouse strain C57BL/6J (56 days, male) 9.3
70238884 Antisense, RP_050526_04_C08, Mouse strain C57BL/6J (56 days, male) 8.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.