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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.2 nTPM
HPA:8.2 nTPM
GTEx:21.4 nTPM
FANTOM5:302.7 Scaled Tags Per Million
Pig:77.1 nTPM
Mouse:55.2 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.6
2411 Female, age 72, unknown 17.5
1833 Male, age 53, unknown 9.6
1830 Male, age 51, unknown 9.0
1827 Male, age 72, unknown 0.0
1870 Female, age 42, unknown 0.0
2019 Male, age 18, unknown 0.0
2219 Male, age 76, both hemispheres 0.0
2586 Male, age 75, left hemisphere 0.0
2666 Male, age 74, left hemisphere 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 0.8
2750 Male, age 76, both hemispheres 4.2
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 0.0
1848 Female, age 42, unknown 0.0
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 0.7
1921 Female, age 85, both hemispheres 2.1
2334 Male, age 80, both hemispheres 0.0
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 0.0
1795 Male, age 51, unknown 0.0
1947 Male, age 18, unknown 0.0
2502 Female, age 75, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 0.0
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.0
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 0.0
2407 Male, age 75, both hemispheres 0.9
1815 Male, age 53, unknown 0.0
1816 Male, age 51, unknown 0.0
1817 Female, age 42, unknown 0.0
1944 Female, age 72, unknown 0.0
2007 Male, age 72, unknown 0.0
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2667 Female, age 75, unknown 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 8.2
2503 Female, age 72, unknown 20.8
1904 Male, age 53, unknown 16.2
1865 Male, age 51, unknown 14.6
2823 Male, age 76, right hemisphere 9.6
1954 Female, age 42, unknown 9.2
2588 Male, age 74, left hemisphere 9.1
2227 Male, age 72, unknown 7.6
2769 Male, age 72, unknown 7.2
1821 Female, age 72, unknown 4.5
2584 Male, age 75, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2785 Male, age 18, unknown 0.0
Substantia nigra
nTPM: 0.0
2583 Male, age 75, right hemisphere 0.7
1851 Male, age 51, unknown 0.0
1889 Female, age 72, unknown 0.0
1916 Female, age 42, unknown 0.0
1941 Male, age 53, unknown 0.0
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2590 Female, age 75, unknown 0.0
2665 Male, age 74, both hemispheres 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 1.9
1895 Male, age 76, right hemisphere 15.7
1913 Female, age 42, unknown 1.8
2668 Female, age 75, unknown 1.5
1796 Male, age 53, unknown 0.0
1839 Male, age 51, unknown 0.0
1995 Male, age 72, unknown 0.0
2087 Female, age 72, unknown 0.0
2261 Male, age 18, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 0.8
2223 Female, age 72, unknown 4.9
1915 Female, age 42, unknown 0.0
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2218 Male, age 76, both hemispheres 0.0
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.4
Samples: 139

Max nTPM: 42.1
Min nTPM: 4.0
Std nTPM: 8.1
Median nTPM: 20.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 42.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 39.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 38.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 38.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 38.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 37.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 35.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 35.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 35.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 34.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 302.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 302.7
FF:10158-103A5 76 years, female 302.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 77.1
Pig sample Sample description nTPM
Midbrain
nTPM: 77.1
Samples: 4

Max nTPM: 94.9
Min nTPM: 57.0
Sample A Female 94.9
Sample B Female 78.6
Sample C Male 57.0
Sample D Male 77.9
Periaqueductal gray
nTPM: 63.0
Samples: 3

Max nTPM: 73.4
Min nTPM: 54.4
Sample B Female 73.4
Sample C Male 54.4
Sample D Male 61.1
Substantia nigra
nTPM: 72.8
Samples: 4

Max nTPM: 114.5
Min nTPM: 52.4
Sample A Female 53.8
Sample B Female 52.4
Sample C Male 70.5
Sample D Male 114.5
Superior colliculi
nTPM: 61.9
Samples: 4

Max nTPM: 91.6
Min nTPM: 39.6
Sample A Female 51.8
Sample B Female 39.6
Sample C Male 64.4
Sample D Male 91.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.2
Samples: 4

Max nTPM: 58.2
Min nTPM: 49.4
Sample A Male 49.4
Sample B Male 55.6
Sample C Female 57.7
Sample D Female 58.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
70238884 Antisense, RP_050526_04_C08, Mouse strain C57BL/6J (56 days, male) 1.6
73817444 Antisense, RP_051101_01_B08, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.