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VMA21
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.5 nTPM
HPA:18.5 nTPM
GTEx:15.2 nTPM
FANTOM5:126.9 Scaled Tags Per Million
Pig:30.9 nTPM
Mouse:41.8 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA010972
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 18.5
Sample id Sample description nTPM
Hippocampus
nTPM: 16.4
1898 Male, age 80, left hemisphere 21.5
1855 Male, age 76, left hemisphere 19.2
1911 Female, age 85, right hemisphere 15.9
2529 Female, age 94, left hemisphere 14.4
2148 Female, age 91, left hemisphere 14.2
2621 Female, age 67, right hemisphere 13.5
Dentate gyrus
nTPM: 16.9
2010 Male, age 76, both hemispheres 19.6
1927 Female, age 91, both hemispheres 18.7
2530 Female, age 94, left hemisphere 17.1
2528 Male, age 74, both hemispheres 16.5
2246 Female, age 85, both hemispheres 16.4
2531 Female, age 67, both hemispheres 12.9
Entorhinal gyrus
nTPM: 13.9
1938 Female, age 85, left hemisphere 15.7
1787 Male, age 76, left hemisphere 15.5
2117 Female, age 91, right hemisphere 14.5
2764 Male, age 80, right hemisphere 13.5
2613 Female, age 94, left hemisphere 12.4
2686 Male, age 75, right hemisphere 12.0
Hippocampus, CA1
nTPM: 18.5
2749 Male, age 80, left hemisphere 22.2
1873 Female, age 85, both hemispheres 21.8
2045 Male, age 76, both hemispheres 19.7
2527 Male, age 74, both hemispheres 14.6
2082 Female, age 91, right hemisphere 14.0
Hippocampus, CA2
nTPM: 17.0
1892 Male, age 76, both hemispheres 21.5
1963 Male, age 80, left hemisphere 20.2
2249 Male, age 74, both hemispheres 17.2
2437 Female, age 94, left hemisphere 15.3
2113 Female, age 91, right hemisphere 14.1
1940 Female, age 85, left hemisphere 13.7
Hippocampus, CA3
nTPM: 16.2
1867 Male, age 76, both hemispheres 18.3
2137 Male, age 80, left hemisphere 18.3
1891 Female, age 85, both hemispheres 16.7
2436 Male, age 74, both hemispheres 16.1
2620 Female, age 94, left hemisphere 14.5
2861 Female, age 67, both hemispheres 13.4
Parahippocampal cortex
nTPM: 14.5
2250 Female, age 67, right hemisphere 17.4
1850 Male, age 80, both hemispheres 15.7
1933 Female, age 85, both hemispheres 15.7
1990 Female, age 91, right hemisphere 15.0
2693 Female, age 94, both hemispheres 15.0
2245 Female, age 91, both hemispheres 14.7
2018 Male, age 76, both hemispheres 13.8
2532 Female, age 72, left hemisphere 13.4
2692 Male, age 74, both hemispheres 13.3
2622 Female, age 67, right hemisphere 11.2
Perirhinal gyrus
nTPM: 16.1
1841 Female, age 85, right hemisphere 17.0
2521 Female, age 94, right hemisphere 16.6
2848 Male, age 76, right hemisphere 15.7
1847 Female, age 91, left hemisphere 15.6
1794 Male, age 80, right hemisphere 15.4
Subiculum
nTPM: 14.7
1901 Male, age 80, both hemispheres 16.3
1977 Female, age 85, both hemispheres 16.0
2729 Female, age 91, right hemisphere 15.5
2042 Male, age 76, both hemispheres 13.9
2619 Male, age 74, both hemispheres 13.4
2438 Female, age 94, left hemisphere 13.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.2
Samples: 197

Max nTPM: 29.3
Min nTPM: 7.1
Std nTPM: 3.0
Median nTPM: 14.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 29.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 23.6
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 22.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 22.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 22.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 22.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 22.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 21.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 20.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 20.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 20.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 126.9
FF:10169-103B7 60 years, female 179.9
FF:10153-102I9 76 years, female 73.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 30.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.9
Samples: 4

Max nTPM: 39.1
Min nTPM: 21.4
Sample A Female 39.1
Sample B Female 29.2
Sample C Male 33.9
Sample D Male 21.4
Entorhinal cortex
nTPM: 26.7
Samples: 4

Max nTPM: 29.4
Min nTPM: 22.1
Sample A Female 27.3
Sample B Female 29.4
Sample C Male 28.1
Sample D Male 22.1
Subiculum
nTPM: 27.8
Samples: 4

Max nTPM: 34.2
Min nTPM: 25.0
Sample A Female 34.2
Sample B Female 25.4
Sample C Male 26.4
Sample D Male 25.0
Ventral hippocampus
nTPM: 28.4
Samples: 4

Max nTPM: 33.8
Min nTPM: 22.9
Sample A Female 33.8
Sample B Female 22.9
Sample C Male 31.2
Sample D Male 25.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 41.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 39.3
Samples: 4

Max nTPM: 39.9
Min nTPM: 38.6
Sample A Male 39.0
Sample B Male 38.6
Sample C Female 39.8
Sample D Female 39.9
Hippocampal formation
nTPM: 41.8
Samples: 4

Max nTPM: 46.4
Min nTPM: 39.1
Sample A Male 46.4
Sample B Male 39.7
Sample C Female 42.1
Sample D Female 39.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
70786700 Antisense, RP_050706_03_A10, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

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