ABOUTMENU
HELP
NEWS
VMA21
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.8 nTPM
HPA:20.8 nTPM
GTEx:16.0 nTPM
FANTOM5:77.0 Scaled Tags Per Million
Pig:38.3 nTPM
Mouse:54.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.9
2586 Male, age 75, left hemisphere 20.0
1870 Female, age 42, unknown 18.2
2411 Female, age 72, unknown 17.6
1827 Male, age 72, unknown 17.0
2666 Male, age 74, left hemisphere 16.7
2219 Male, age 76, both hemispheres 16.5
1833 Male, age 53, unknown 16.4
1830 Male, age 51, unknown 15.8
2019 Male, age 18, unknown 15.8
2828 Female, age 72, unknown 15.0
Dorsal raphe nucleus
nTPM: 20.2
2298 Female, age 72, unknown 22.6
2047 Male, age 72, unknown 21.5
1828 Male, age 53, unknown 20.2
2016 Female, age 72, unknown 19.2
2750 Male, age 76, both hemispheres 17.5
Inferior colliculus
nTPM: 16.4
2097 Female, age 72, unknown 17.9
1890 Male, age 53, unknown 16.7
1848 Female, age 42, unknown 16.5
2849 Male, age 72, unknown 14.4
Median raphe nucleus
nTPM: 20.8
2220 Male, age 76, midline 20.8
Pedunculopontine tegmental nucleus
nTPM: 16.9
2334 Male, age 80, both hemispheres 19.3
1921 Female, age 85, both hemispheres 17.1
2338 Male, age 61, both hemispheres 14.3
Periaquaductal grey, anterior
nTPM: 19.9
2502 Female, age 75, unknown 21.9
1947 Male, age 18, unknown 19.7
1795 Male, age 51, unknown 18.1
Periaquaductal grey, dorsal
nTPM: 18.0
2850 Male, age 76, both hemispheres 19.0
1840 Male, age 53, unknown 18.8
1831 Male, age 72, unknown 17.5
2464 Female, age 72, unknown 16.7
Periaquaductal grey, lateral
nTPM: 16.8
2272 Male, age 74, both hemispheres 18.2
2053 Male, age 18, unknown 16.4
2140 Male, age 76, both hemispheres 15.8
Pretectal area
nTPM: 17.8
2224 Female, age 72, unknown 21.2
2273 Male, age 74, both hemispheres 19.4
1816 Male, age 51, unknown 19.0
2825 Male, age 18, unknown 18.1
2007 Male, age 72, unknown 17.9
1944 Female, age 72, unknown 17.4
1815 Male, age 53, unknown 17.3
2407 Male, age 75, both hemispheres 17.3
2667 Female, age 75, unknown 16.8
1817 Female, age 42, unknown 16.5
2316 Male, age 76, right hemisphere 14.8
Red nucleus
nTPM: 16.0
1821 Female, age 72, unknown 18.1
2584 Male, age 75, left hemisphere 17.2
2503 Female, age 72, unknown 16.8
1954 Female, age 42, unknown 16.6
2725 Female, age 75, unknown 16.4
1904 Male, age 53, unknown 15.9
1865 Male, age 51, unknown 15.7
2785 Male, age 18, unknown 15.7
2227 Male, age 72, unknown 15.4
2769 Male, age 72, unknown 15.0
2588 Male, age 74, left hemisphere 14.8
2823 Male, age 76, right hemisphere 14.6
Substantia nigra
nTPM: 19.3
2241 Male, age 72, unknown 23.8
1916 Female, age 42, unknown 22.8
1851 Male, age 51, unknown 20.4
2699 Male, age 18, unknown 20.3
1941 Male, age 53, unknown 19.1
1889 Female, age 72, unknown 18.6
2409 Female, age 72, unknown 17.3
2583 Male, age 75, right hemisphere 17.1
2590 Female, age 75, unknown 16.9
2665 Male, age 74, both hemispheres 16.3
Superior colliculus
nTPM: 16.9
2664 Male, age 75, both hemispheres 22.1
2668 Female, age 75, unknown 17.6
2261 Male, age 18, unknown 17.4
2087 Female, age 72, unknown 17.2
1839 Male, age 51, unknown 16.9
2587 Male, age 74, left hemisphere 16.8
1995 Male, age 72, unknown 16.0
1796 Male, age 53, unknown 15.7
1913 Female, age 42, unknown 15.1
1895 Male, age 76, right hemisphere 14.6
Ventral tegmental area
nTPM: 19.5
2021 Male, age 53, unknown 20.6
1942 Male, age 51, unknown 20.3
1915 Female, age 42, unknown 20.1
2218 Male, age 76, both hemispheres 19.3
2223 Female, age 72, unknown 18.7
2410 Female, age 72, unknown 18.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.0
Samples: 139

Max nTPM: 27.1
Min nTPM: 11.3
Std nTPM: 2.7
Median nTPM: 15.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 27.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 24.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 23.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 21.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 21.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 20.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 20.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 20.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 20.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 20.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 20.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.0
FF:10158-103A5 76 years, female 77.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.3
Pig sample Sample description nTPM
Midbrain
nTPM: 38.4
Samples: 4

Max nTPM: 49.5
Min nTPM: 33.4
Sample A Female 49.5
Sample B Female 35.8
Sample C Male 34.7
Sample D Male 33.4
Periaqueductal gray
nTPM: 32.3
Samples: 3

Max nTPM: 34.6
Min nTPM: 29.9
Sample B Female 32.4
Sample C Male 34.6
Sample D Male 29.9
Substantia nigra
nTPM: 35.5
Samples: 4

Max nTPM: 45.1
Min nTPM: 29.1
Sample A Female 45.1
Sample B Female 29.1
Sample C Male 36.5
Sample D Male 31.4
Superior colliculi
nTPM: 32.2
Samples: 4

Max nTPM: 38.2
Min nTPM: 23.9
Sample A Female 38.2
Sample B Female 23.9
Sample C Male 33.1
Sample D Male 33.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.2
Samples: 4

Max nTPM: 56.4
Min nTPM: 51.3
Sample A Male 54.4
Sample B Male 56.4
Sample C Female 54.6
Sample D Female 51.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70786700 Antisense, RP_050706_03_A10, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.