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COA6
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:39.7 nTPM
HPA:39.7 nTPM
GTEx:38.8 nTPM
FANTOM5:37.6 Scaled Tags Per Million
Pig:4.9 nTPM
Mouse:24.0 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028588
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Hippocampus
nTPM: 37.3
1898 Male, age 80, left hemisphere 38.8
2148 Female, age 91, left hemisphere 37.8
2529 Female, age 94, left hemisphere 37.7
1911 Female, age 85, right hemisphere 36.9
1855 Male, age 76, left hemisphere 36.7
2621 Female, age 67, right hemisphere 35.9
Dentate gyrus
nTPM: 37.8
1927 Female, age 91, both hemispheres 39.9
2531 Female, age 67, both hemispheres 39.6
2010 Male, age 76, both hemispheres 37.7
2530 Female, age 94, left hemisphere 37.3
2246 Female, age 85, both hemispheres 36.7
2528 Male, age 74, both hemispheres 35.4
Entorhinal gyrus
nTPM: 37.0
2764 Male, age 80, right hemisphere 39.7
1938 Female, age 85, left hemisphere 38.5
2613 Female, age 94, left hemisphere 36.7
1787 Male, age 76, left hemisphere 35.9
2117 Female, age 91, right hemisphere 35.9
2686 Male, age 75, right hemisphere 35.3
Hippocampus, CA1
nTPM: 38.9
2749 Male, age 80, left hemisphere 42.2
2045 Male, age 76, both hemispheres 40.8
1873 Female, age 85, both hemispheres 38.1
2527 Male, age 74, both hemispheres 37.1
2082 Female, age 91, right hemisphere 36.2
Hippocampus, CA2
nTPM: 38.0
1940 Female, age 85, left hemisphere 41.0
1892 Male, age 76, both hemispheres 40.5
1963 Male, age 80, left hemisphere 38.0
2249 Male, age 74, both hemispheres 36.9
2437 Female, age 94, left hemisphere 36.0
2113 Female, age 91, right hemisphere 35.9
Hippocampus, CA3
nTPM: 38.9
2137 Male, age 80, left hemisphere 42.5
1867 Male, age 76, both hemispheres 40.8
2620 Female, age 94, left hemisphere 38.4
2436 Male, age 74, both hemispheres 37.7
1891 Female, age 85, both hemispheres 37.4
2861 Female, age 67, both hemispheres 36.5
Parahippocampal cortex
nTPM: 38.0
1850 Male, age 80, both hemispheres 41.2
1933 Female, age 85, both hemispheres 40.5
2532 Female, age 72, left hemisphere 38.6
2245 Female, age 91, both hemispheres 37.9
1990 Female, age 91, right hemisphere 37.8
2018 Male, age 76, both hemispheres 37.8
2693 Female, age 94, both hemispheres 37.8
2622 Female, age 67, right hemisphere 37.1
2250 Female, age 67, right hemisphere 36.9
2692 Male, age 74, both hemispheres 34.0
Perirhinal gyrus
nTPM: 39.7
1841 Female, age 85, right hemisphere 41.1
1847 Female, age 91, left hemisphere 40.7
1794 Male, age 80, right hemisphere 39.8
2521 Female, age 94, right hemisphere 39.8
2848 Male, age 76, right hemisphere 37.1
Subiculum
nTPM: 35.6
1901 Male, age 80, both hemispheres 37.4
1977 Female, age 85, both hemispheres 37.3
2729 Female, age 91, right hemisphere 35.1
2042 Male, age 76, both hemispheres 34.7
2619 Male, age 74, both hemispheres 34.7
2438 Female, age 94, left hemisphere 34.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.8
Samples: 197

Max nTPM: 122.2
Min nTPM: 12.6
Std nTPM: 15.2
Median nTPM: 36.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 122.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 90.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 79.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 77.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 77.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 72.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 70.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 70.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 69.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 66.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 64.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.6
FF:10169-103B7 60 years, female 49.1
FF:10153-102I9 76 years, female 26.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.5
Samples: 4

Max nTPM: 5.0
Min nTPM: 3.9
Sample A Female 5.0
Sample B Female 4.1
Sample C Male 3.9
Sample D Male 4.9
Entorhinal cortex
nTPM: 4.9
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.2
Sample A Female 4.9
Sample B Female 5.1
Sample C Male 5.2
Sample D Male 4.2
Subiculum
nTPM: 3.9
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.4
Sample A Female 5.3
Sample B Female 3.5
Sample C Male 3.4
Sample D Male 3.4
Ventral hippocampus
nTPM: 4.4
Samples: 4

Max nTPM: 5.0
Min nTPM: 3.5
Sample A Female 4.7
Sample B Female 3.5
Sample C Male 4.2
Sample D Male 5.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.0
Samples: 4

Max nTPM: 31.2
Min nTPM: 20.7
Sample A Male 20.7
Sample B Male 31.2
Sample C Female 22.9
Sample D Female 21.1
Hippocampal formation
nTPM: 21.0
Samples: 4

Max nTPM: 25.1
Min nTPM: 16.2
Sample A Male 25.1
Sample B Male 21.6
Sample C Female 16.2
Sample D Female 21.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
70474887 Antisense, RP_050623_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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