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COA6
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.9 nTPM
HPA:35.9 nTPM
GTEx:31.5 nTPM
FANTOM5:23.7 Scaled Tags Per Million
Pig:5.6 nTPM
Mouse:21.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.8
2019 Male, age 18, unknown 35.1
1827 Male, age 72, unknown 34.9
2219 Male, age 76, both hemispheres 34.6
1870 Female, age 42, unknown 34.5
2828 Female, age 72, unknown 34.5
2411 Female, age 72, unknown 33.8
1833 Male, age 53, unknown 33.3
1830 Male, age 51, unknown 33.1
2666 Male, age 74, left hemisphere 32.6
2586 Male, age 75, left hemisphere 31.9
Dorsal raphe nucleus
nTPM: 34.3
2298 Female, age 72, unknown 35.5
2750 Male, age 76, both hemispheres 35.2
1828 Male, age 53, unknown 34.5
2047 Male, age 72, unknown 33.1
2016 Female, age 72, unknown 33.0
Inferior colliculus
nTPM: 34.2
2097 Female, age 72, unknown 35.7
1890 Male, age 53, unknown 34.2
1848 Female, age 42, unknown 33.9
2849 Male, age 72, unknown 33.0
Median raphe nucleus
nTPM: 34.4
2220 Male, age 76, midline 34.4
Pedunculopontine tegmental nucleus
nTPM: 35.4
1921 Female, age 85, both hemispheres 35.7
2334 Male, age 80, both hemispheres 35.5
2338 Male, age 61, both hemispheres 34.9
Periaquaductal grey, anterior
nTPM: 34.2
1947 Male, age 18, unknown 34.5
1795 Male, age 51, unknown 34.3
2502 Female, age 75, unknown 33.9
Periaquaductal grey, dorsal
nTPM: 33.5
1840 Male, age 53, unknown 34.5
1831 Male, age 72, unknown 33.3
2850 Male, age 76, both hemispheres 33.3
2464 Female, age 72, unknown 32.8
Periaquaductal grey, lateral
nTPM: 33.5
2272 Male, age 74, both hemispheres 33.9
2053 Male, age 18, unknown 33.5
2140 Male, age 76, both hemispheres 33.0
Pretectal area
nTPM: 34.8
2007 Male, age 72, unknown 36.6
1816 Male, age 51, unknown 36.2
1944 Female, age 72, unknown 35.8
1817 Female, age 42, unknown 35.6
1815 Male, age 53, unknown 35.1
2667 Female, age 75, unknown 34.6
2273 Male, age 74, both hemispheres 34.5
2224 Female, age 72, unknown 34.0
2316 Male, age 76, right hemisphere 34.0
2407 Male, age 75, both hemispheres 33.6
2825 Male, age 18, unknown 33.3
Red nucleus
nTPM: 33.8
1821 Female, age 72, unknown 35.7
2823 Male, age 76, right hemisphere 34.6
2785 Male, age 18, unknown 34.3
2503 Female, age 72, unknown 34.2
1954 Female, age 42, unknown 34.0
2725 Female, age 75, unknown 34.0
1904 Male, age 53, unknown 33.6
2227 Male, age 72, unknown 33.6
1865 Male, age 51, unknown 33.5
2769 Male, age 72, unknown 33.4
2584 Male, age 75, left hemisphere 32.9
2588 Male, age 74, left hemisphere 32.2
Substantia nigra
nTPM: 35.9
1916 Female, age 42, unknown 41.1
2241 Male, age 72, unknown 38.2
1851 Male, age 51, unknown 37.6
1889 Female, age 72, unknown 36.2
1941 Male, age 53, unknown 35.8
2409 Female, age 72, unknown 35.1
2590 Female, age 75, unknown 34.5
2699 Male, age 18, unknown 34.4
2583 Male, age 75, right hemisphere 33.7
2665 Male, age 74, both hemispheres 32.6
Superior colliculus
nTPM: 34.0
2668 Female, age 75, unknown 35.3
2087 Female, age 72, unknown 35.0
1895 Male, age 76, right hemisphere 34.9
1796 Male, age 53, unknown 34.8
2587 Male, age 74, left hemisphere 34.5
2261 Male, age 18, unknown 34.4
1913 Female, age 42, unknown 33.4
1839 Male, age 51, unknown 32.8
1995 Male, age 72, unknown 32.8
2664 Male, age 75, both hemispheres 32.5
Ventral tegmental area
nTPM: 35.1
2218 Male, age 76, both hemispheres 36.9
1915 Female, age 42, unknown 36.5
2410 Female, age 72, unknown 35.0
1942 Male, age 51, unknown 34.6
2223 Female, age 72, unknown 34.5
2021 Male, age 53, unknown 33.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.5
Samples: 139

Max nTPM: 68.1
Min nTPM: 16.5
Std nTPM: 8.7
Median nTPM: 30.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 68.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 59.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 58.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 50.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 48.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 48.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 47.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 46.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 46.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 45.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 44.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.7
FF:10158-103A5 76 years, female 23.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.6
Pig sample Sample description nTPM
Midbrain
nTPM: 5.6
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.4
Sample A Female 5.5
Sample B Female 5.8
Sample C Male 4.4
Sample D Male 6.7
Periaqueductal gray
nTPM: 4.7
Samples: 3

Max nTPM: 5.8
Min nTPM: 4.0
Sample B Female 4.0
Sample C Male 5.8
Sample D Male 4.4
Substantia nigra
nTPM: 5.2
Samples: 4

Max nTPM: 7.0
Min nTPM: 4.0
Sample A Female 7.0
Sample B Female 4.0
Sample C Male 5.5
Sample D Male 4.2
Superior colliculi
nTPM: 5.6
Samples: 4

Max nTPM: 6.8
Min nTPM: 4.5
Sample A Female 6.8
Sample B Female 5.8
Sample C Male 4.5
Sample D Male 5.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.6
Samples: 4

Max nTPM: 26.5
Min nTPM: 18.8
Sample A Male 22.2
Sample B Male 18.8
Sample C Female 26.5
Sample D Female 18.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70474887 Antisense, RP_050623_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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