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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
RNA expressioni
Consensus:63.5 nTPM
HPA:63.5 nTPM
GTEx:78.3 nTPM
FANTOM5:53.5 Scaled Tags Per Million
Pig:73.3 nTPM
Mouse:37.6 nTPM
Allen mouse:11.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA005701
Glial cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 63.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 62.3
2846 Female, age 79, unknown 66.6
1781 Male, age 74, unknown 63.6
2290 Female, age 72, unknown 62.4
2481 Female, age 94, left hemisphere 62.4
1854 Male, age 80, left hemisphere 62.3
1857 Female, age 85, left hemisphere 61.4
2288 Male, age 75, left hemisphere 60.3
2289 Male, age 61, right hemisphere 59.6
Claustrum
nTPM: 60.6
2491 Male, age 75, both hemispheres 62.6
2198 Male, age 80, both hemispheres 62.2
2645 Female, age 72, unknown 61.4
2196 Female, age 79, unknown 61.0
1956 Male, age 74, unknown 60.7
2284 Female, age 91, both hemispheres 60.6
2568 Male, age 61, both hemispheres 59.8
2392 Female, age 94, both hemispheres 59.6
2292 Female, age 85, both hemispheres 58.0
Globus pallidus, externus
nTPM: 62.0
2772 Female, age 79, unknown 65.4
2395 Male, age 75, both hemispheres 62.9
1996 Male, age 80, right hemisphere 62.3
2567 Female, age 72, unknown 60.4
2646 Male, age 61, right hemisphere 59.2
Globus pallidus, internus
nTPM: 61.0
2483 Female, age 94, right hemisphere 64.0
1818 Male, age 74, unknown 62.6
2287 Male, age 75, right hemisphere 62.0
2037 Male, age 80, right hemisphere 61.7
2778 Female, age 91, both hemispheres 59.8
2566 Female, age 72, unknown 59.1
2111 Female, age 85, right hemisphere 57.9
Nucleus accumbens
nTPM: 61.7
1783 Male, age 74, unknown 65.2
1856 Female, age 91, right hemisphere 63.2
1806 Female, age 85, left hemisphere 62.6
2698 Female, age 72, unknown 61.2
2824 Male, age 61, right hemisphere 61.2
2286 Male, age 75, left hemisphere 60.8
2732 Male, age 80, right hemisphere 60.4
2391 Female, age 94, left hemisphere 58.9
Nucleus basalis of Meynert
nTPM: 61.5
2484 Female, age 94, left hemisphere 62.1
2821 Male, age 75, both hemispheres 62.1
2569 Male, age 61, both hemispheres 61.3
2393 Male, age 80, right hemisphere 60.6
Nucleus of the diagonal band
nTPM: 63.5
2775 Male, age 80, right hemisphere 66.9
1812 Female, age 91, both hemispheres 66.7
2029 Male, age 61, right hemisphere 61.6
2195 Female, age 85, both hemispheres 61.6
1979 Male, age 74, unknown 60.5
Olfactory tubercle
nTPM: 62.8
1998 Female, age 91, both hemispheres 63.8
1846 Male, age 80, right hemisphere 63.6
2487 Female, age 94, left hemisphere 63.4
2856 Male, age 75, right hemisphere 60.4
Putamen
nTPM: 62.1
2466 Female, age 79, unknown 65.8
2482 Female, age 94, left hemisphere 64.1
1838 Male, age 80, right hemisphere 62.4
1937 Female, age 91, right hemisphere 62.1
2647 Male, age 75, left hemisphere 60.7
1829 Male, age 74, unknown 60.0
2489 Female, age 72, unknown 59.6
Septal nuclei
nTPM: 62.3
2031 Female, age 72, unknown 68.3
1960 Male, age 74, unknown 66.6
2009 Female, age 91, both hemispheres 61.8
2059 Female, age 85, both hemispheres 61.0
2394 Male, age 61, left hemisphere 61.0
2199 Male, age 80, right hemisphere 59.5
2629 Female, age 94, right hemisphere 58.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 78.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 72.0
Samples: 246

Max nTPM: 139.5
Min nTPM: 42.1
Std nTPM: 14.0
Median nTPM: 70.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 139.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 114.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 110.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 109.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 109.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 108.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 107.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 104.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 103.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 102.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 101.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 76.9
Samples: 246

Max nTPM: 180.7
Min nTPM: 44.7
Std nTPM: 20.2
Median nTPM: 73.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 180.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 158.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 155.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 145.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 141.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 139.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 125.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 123.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 120.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 116.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 115.5
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Brain - Putamen (basal ganglia)
Average nTPM: 78.3
Samples: 205

Max nTPM: 148.1
Min nTPM: 41.8
Std nTPM: 14.7
Median nTPM: 76.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 148.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 132.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 127.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 121.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 120.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 118.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 117.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 113.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 106.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 102.5
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 100.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 41.4
FF:10164-103B2 76 years, female 41.4
Globus pallidus
Scaled Tags Per Million: 44.0
FF:10161-103A8 76 years, female 47.8
FF:10175-103C4 60 years, female 40.2
Nucleus accumbens
Scaled Tags Per Million: 53.5
FF:10037-101F1 23-56 years, mixed 53.5
Putamen
Scaled Tags Per Million: 48.1
FF:10176-103C5 60 years, female 48.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 73.3
Pig sample Sample description nTPM
Caudate
nTPM: 67.6
Samples: 4

Max nTPM: 78.4
Min nTPM: 58.6
Sample A Female 58.6
Sample B Female 73.8
Sample C Male 78.4
Sample D Male 59.7
Putamen
nTPM: 73.3
Samples: 4

Max nTPM: 93.9
Min nTPM: 60.1
Sample A Female 69.4
Sample B Female 60.1
Sample C Male 93.9
Sample D Male 69.8
Septum
nTPM: 73.1
Samples: 4

Max nTPM: 81.0
Min nTPM: 63.3
Sample A Female 78.5
Sample B Female 69.6
Sample C Male 81.0
Sample D Male 63.3
Ventral pallidum
nTPM: 67.9
Samples: 4

Max nTPM: 80.6
Min nTPM: 58.2
Sample A Female 58.2
Sample B Female 73.1
Sample C Male 80.6
Sample D Male 59.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 37.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 35.4
Samples: 4

Max nTPM: 36.9
Min nTPM: 34.0
Sample A Male 34.0
Sample B Male 36.5
Sample C Female 34.1
Sample D Female 36.9
Septum
nTPM: 32.4
Samples: 4

Max nTPM: 33.7
Min nTPM: 30.1
Sample A Male 32.0
Sample B Male 33.7
Sample C Female 33.6
Sample D Female 30.1
Ventral forebrain
nTPM: 37.7
Samples: 4

Max nTPM: 42.0
Min nTPM: 34.2
Sample A Male 35.2
Sample B Male 34.2
Sample C Female 42.0
Sample D Female 39.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.4
81600090 Antisense, RP_080108_02_D06, Mouse strain C57BL/6J (56 days, male) 13.9
68441460 Antisense, RP_041214_02_D05, Mouse strain C57BL/6J (56 days, male) 8.9
Pallidum
Expression energy: 11.8
81600090 Antisense, RP_080108_02_D06, Mouse strain C57BL/6J (56 days, male) 14.0
68441460 Antisense, RP_041214_02_D05, Mouse strain C57BL/6J (56 days, male) 9.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.