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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.7 nTPM
HPA:56.7 nTPM
GTEx:64.7 nTPM
FANTOM5:93.8 Scaled Tags Per Million
Pig:31.9 nTPM
Mouse:36.2 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.0
1830 Male, age 51, unknown 53.0
1833 Male, age 53, unknown 53.0
2219 Male, age 76, both hemispheres 52.7
1870 Female, age 42, unknown 51.4
2019 Male, age 18, unknown 50.7
1827 Male, age 72, unknown 50.3
2666 Male, age 74, left hemisphere 50.1
2586 Male, age 75, left hemisphere 49.9
2411 Female, age 72, unknown 49.5
2828 Female, age 72, unknown 49.2
Dorsal raphe nucleus
nTPM: 52.7
2750 Male, age 76, both hemispheres 54.6
1828 Male, age 53, unknown 53.3
2047 Male, age 72, unknown 52.7
2016 Female, age 72, unknown 52.5
2298 Female, age 72, unknown 50.7
Inferior colliculus
nTPM: 52.9
2849 Male, age 72, unknown 56.4
1890 Male, age 53, unknown 52.0
1848 Female, age 42, unknown 51.9
2097 Female, age 72, unknown 51.4
Median raphe nucleus
nTPM: 56.7
2220 Male, age 76, midline 56.7
Pedunculopontine tegmental nucleus
nTPM: 53.2
2338 Male, age 61, both hemispheres 54.3
2334 Male, age 80, both hemispheres 53.4
1921 Female, age 85, both hemispheres 52.0
Periaquaductal grey, anterior
nTPM: 52.3
1947 Male, age 18, unknown 55.4
2502 Female, age 75, unknown 51.2
1795 Male, age 51, unknown 50.2
Periaquaductal grey, dorsal
nTPM: 52.5
2850 Male, age 76, both hemispheres 57.9
1840 Male, age 53, unknown 52.9
1831 Male, age 72, unknown 50.1
2464 Female, age 72, unknown 49.0
Periaquaductal grey, lateral
nTPM: 53.8
2272 Male, age 74, both hemispheres 55.1
2140 Male, age 76, both hemispheres 54.5
2053 Male, age 18, unknown 51.8
Pretectal area
nTPM: 53.4
1817 Female, age 42, unknown 55.6
2273 Male, age 74, both hemispheres 55.4
1816 Male, age 51, unknown 54.6
2667 Female, age 75, unknown 54.4
1944 Female, age 72, unknown 54.3
1815 Male, age 53, unknown 53.6
2825 Male, age 18, unknown 53.6
2224 Female, age 72, unknown 53.1
2007 Male, age 72, unknown 52.3
2407 Male, age 75, both hemispheres 50.7
2316 Male, age 76, right hemisphere 49.4
Red nucleus
nTPM: 51.2
1821 Female, age 72, unknown 55.5
1954 Female, age 42, unknown 53.0
2823 Male, age 76, right hemisphere 52.6
1865 Male, age 51, unknown 52.3
1904 Male, age 53, unknown 51.6
2785 Male, age 18, unknown 51.6
2725 Female, age 75, unknown 51.4
2588 Male, age 74, left hemisphere 50.2
2503 Female, age 72, unknown 49.7
2227 Male, age 72, unknown 49.4
2584 Male, age 75, left hemisphere 49.1
2769 Male, age 72, unknown 48.2
Substantia nigra
nTPM: 55.8
2241 Male, age 72, unknown 62.6
2699 Male, age 18, unknown 59.1
1916 Female, age 42, unknown 58.7
2409 Female, age 72, unknown 58.6
1851 Male, age 51, unknown 57.9
1941 Male, age 53, unknown 55.3
1889 Female, age 72, unknown 55.0
2590 Female, age 75, unknown 52.0
2583 Male, age 75, right hemisphere 49.8
2665 Male, age 74, both hemispheres 49.4
Superior colliculus
nTPM: 52.0
2668 Female, age 75, unknown 55.0
2587 Male, age 74, left hemisphere 54.5
1913 Female, age 42, unknown 53.1
1895 Male, age 76, right hemisphere 52.9
1995 Male, age 72, unknown 52.2
2664 Male, age 75, both hemispheres 51.7
1796 Male, age 53, unknown 51.3
1839 Male, age 51, unknown 51.1
2087 Female, age 72, unknown 50.4
2261 Male, age 18, unknown 47.7
Ventral tegmental area
nTPM: 54.1
2223 Female, age 72, unknown 57.3
1915 Female, age 42, unknown 56.7
2410 Female, age 72, unknown 54.6
2218 Male, age 76, both hemispheres 53.8
2021 Male, age 53, unknown 51.6
1942 Male, age 51, unknown 50.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.7
Samples: 139

Max nTPM: 94.4
Min nTPM: 40.0
Std nTPM: 11.2
Median nTPM: 63.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 94.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 93.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 87.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 86.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 86.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 86.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 85.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 83.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 82.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 82.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 82.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.8
FF:10158-103A5 76 years, female 93.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.9
Pig sample Sample description nTPM
Midbrain
nTPM: 29.3
Samples: 4

Max nTPM: 39.7
Min nTPM: 24.0
Sample A Female 39.7
Sample B Female 28.6
Sample C Male 24.0
Sample D Male 24.8
Periaqueductal gray
nTPM: 24.4
Samples: 3

Max nTPM: 27.9
Min nTPM: 19.4
Sample B Female 25.8
Sample C Male 27.9
Sample D Male 19.4
Substantia nigra
nTPM: 31.9
Samples: 4

Max nTPM: 41.9
Min nTPM: 25.6
Sample A Female 41.9
Sample B Female 27.5
Sample C Male 32.4
Sample D Male 25.6
Superior colliculi
nTPM: 27.1
Samples: 4

Max nTPM: 32.8
Min nTPM: 20.9
Sample A Female 32.8
Sample B Female 20.9
Sample C Male 31.0
Sample D Male 23.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 37.8
Min nTPM: 31.9
Sample A Male 31.9
Sample B Male 37.8
Sample C Female 37.6
Sample D Female 37.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
67881775 Antisense, RP_040920_02_H02, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.