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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.4 nTPM
HPA:27.4 nTPM
GTEx:25.1 nTPM
FANTOM5:160.4 Scaled Tags Per Million
Pig:56.5 nTPM
Mouse:70.3 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.6
1833 Male, age 53, unknown 26.1
1827 Male, age 72, unknown 25.7
2586 Male, age 75, left hemisphere 25.4
1830 Male, age 51, unknown 25.1
2411 Female, age 72, unknown 23.8
1870 Female, age 42, unknown 23.6
2019 Male, age 18, unknown 23.5
2666 Male, age 74, left hemisphere 22.6
2828 Female, age 72, unknown 20.5
2219 Male, age 76, both hemispheres 19.5
Dorsal raphe nucleus
nTPM: 24.2
2016 Female, age 72, unknown 28.2
2047 Male, age 72, unknown 24.2
2750 Male, age 76, both hemispheres 23.4
2298 Female, age 72, unknown 22.7
1828 Male, age 53, unknown 22.5
Inferior colliculus
nTPM: 25.5
1848 Female, age 42, unknown 28.6
2849 Male, age 72, unknown 26.6
2097 Female, age 72, unknown 23.5
1890 Male, age 53, unknown 23.2
Median raphe nucleus
nTPM: 23.6
2220 Male, age 76, midline 23.6
Pedunculopontine tegmental nucleus
nTPM: 23.4
2334 Male, age 80, both hemispheres 24.7
1921 Female, age 85, both hemispheres 22.7
2338 Male, age 61, both hemispheres 22.7
Periaquaductal grey, anterior
nTPM: 27.4
1947 Male, age 18, unknown 30.7
2502 Female, age 75, unknown 30.3
1795 Male, age 51, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 23.9
1840 Male, age 53, unknown 25.8
2850 Male, age 76, both hemispheres 24.7
2464 Female, age 72, unknown 23.1
1831 Male, age 72, unknown 21.9
Periaquaductal grey, lateral
nTPM: 21.9
2053 Male, age 18, unknown 26.5
2140 Male, age 76, both hemispheres 20.1
2272 Male, age 74, both hemispheres 19.1
Pretectal area
nTPM: 24.8
1816 Male, age 51, unknown 30.8
1944 Female, age 72, unknown 29.2
2007 Male, age 72, unknown 24.9
2825 Male, age 18, unknown 24.4
2407 Male, age 75, both hemispheres 24.0
2667 Female, age 75, unknown 24.0
1817 Female, age 42, unknown 23.9
2316 Male, age 76, right hemisphere 23.9
2224 Female, age 72, unknown 23.7
1815 Male, age 53, unknown 22.9
2273 Male, age 74, both hemispheres 21.1
Red nucleus
nTPM: 23.8
2588 Male, age 74, left hemisphere 28.8
1821 Female, age 72, unknown 27.1
2503 Female, age 72, unknown 26.1
2584 Male, age 75, left hemisphere 24.4
1904 Male, age 53, unknown 24.3
1865 Male, age 51, unknown 24.1
2769 Male, age 72, unknown 22.9
1954 Female, age 42, unknown 22.4
2823 Male, age 76, right hemisphere 22.4
2227 Male, age 72, unknown 21.6
2725 Female, age 75, unknown 21.3
2785 Male, age 18, unknown 20.3
Substantia nigra
nTPM: 26.1
2409 Female, age 72, unknown 45.7
2241 Male, age 72, unknown 29.1
2590 Female, age 75, unknown 26.6
1889 Female, age 72, unknown 25.2
1941 Male, age 53, unknown 24.2
2665 Male, age 74, both hemispheres 23.2
1851 Male, age 51, unknown 22.5
2699 Male, age 18, unknown 21.8
1916 Female, age 42, unknown 21.6
2583 Male, age 75, right hemisphere 21.3
Superior colliculus
nTPM: 24.0
1895 Male, age 76, right hemisphere 26.2
1839 Male, age 51, unknown 25.8
2587 Male, age 74, left hemisphere 25.6
2087 Female, age 72, unknown 24.0
1796 Male, age 53, unknown 23.8
2261 Male, age 18, unknown 23.6
2668 Female, age 75, unknown 23.3
2664 Male, age 75, both hemispheres 22.7
1995 Male, age 72, unknown 22.3
1913 Female, age 42, unknown 22.2
Ventral tegmental area
nTPM: 24.0
2021 Male, age 53, unknown 26.1
2410 Female, age 72, unknown 25.7
2223 Female, age 72, unknown 23.9
1942 Male, age 51, unknown 23.7
1915 Female, age 42, unknown 23.1
2218 Male, age 76, both hemispheres 21.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.1
Samples: 139

Max nTPM: 36.8
Min nTPM: 12.4
Std nTPM: 4.8
Median nTPM: 24.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 36.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 36.5
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 36.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 35.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 34.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 33.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 33.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 32.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 32.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 31.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 31.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 160.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 160.4
FF:10158-103A5 76 years, female 160.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.5
Pig sample Sample description nTPM
Midbrain
nTPM: 56.5
Samples: 4

Max nTPM: 64.1
Min nTPM: 52.5
Sample A Female 55.0
Sample B Female 54.4
Sample C Male 64.1
Sample D Male 52.5
Periaqueductal gray
nTPM: 47.3
Samples: 3

Max nTPM: 51.4
Min nTPM: 42.6
Sample B Female 48.0
Sample C Male 51.4
Sample D Male 42.6
Substantia nigra
nTPM: 50.9
Samples: 4

Max nTPM: 62.7
Min nTPM: 42.3
Sample A Female 62.7
Sample B Female 45.6
Sample C Male 52.9
Sample D Male 42.3
Superior colliculi
nTPM: 56.0
Samples: 4

Max nTPM: 60.7
Min nTPM: 47.9
Sample A Female 60.0
Sample B Female 47.9
Sample C Male 60.7
Sample D Male 55.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.3
Samples: 4

Max nTPM: 77.4
Min nTPM: 62.9
Sample A Male 62.9
Sample B Male 70.8
Sample C Female 77.4
Sample D Female 70.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
69735502 Antisense, RP_050503_02_H11, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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