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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:54.4 nTPM
HPA:54.4 nTPM
GTEx:53.5 nTPM
FANTOM5:46.5 Scaled Tags Per Million
Pig:5.9 nTPM

CAUDATE - Antibody stainingi
Antibody HPA006764Antibody HPA007244
Glial cells Not detectedNot detected
Neuronal cells LowMedium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.6
2481 Female, age 94, left hemisphere 50.2
2288 Male, age 75, left hemisphere 45.9
1854 Male, age 80, left hemisphere 45.2
2289 Male, age 61, right hemisphere 45.0
2290 Female, age 72, unknown 44.0
1857 Female, age 85, left hemisphere 42.5
2846 Female, age 79, unknown 42.1
1781 Male, age 74, unknown 41.6
Claustrum
nTPM: 41.4
2491 Male, age 75, both hemispheres 42.7
1956 Male, age 74, unknown 42.5
2198 Male, age 80, both hemispheres 42.5
2292 Female, age 85, both hemispheres 42.5
2196 Female, age 79, unknown 41.4
2645 Female, age 72, unknown 41.1
2392 Female, age 94, both hemispheres 40.7
2284 Female, age 91, both hemispheres 40.6
2568 Male, age 61, both hemispheres 38.3
Globus pallidus, externus
nTPM: 54.4
1996 Male, age 80, right hemisphere 60.2
2646 Male, age 61, right hemisphere 58.9
2772 Female, age 79, unknown 56.3
2395 Male, age 75, both hemispheres 50.2
2567 Female, age 72, unknown 46.4
Globus pallidus, internus
nTPM: 52.1
2483 Female, age 94, right hemisphere 56.4
2778 Female, age 91, both hemispheres 54.3
2037 Male, age 80, right hemisphere 52.6
2287 Male, age 75, right hemisphere 51.3
1818 Male, age 74, unknown 50.8
2111 Female, age 85, right hemisphere 50.1
2566 Female, age 72, unknown 49.2
Nucleus accumbens
nTPM: 44.0
2286 Male, age 75, left hemisphere 47.5
2391 Female, age 94, left hemisphere 45.9
2732 Male, age 80, right hemisphere 45.8
2698 Female, age 72, unknown 45.7
1806 Female, age 85, left hemisphere 43.2
1783 Male, age 74, unknown 41.8
1856 Female, age 91, right hemisphere 41.5
2824 Male, age 61, right hemisphere 40.3
Nucleus basalis of Meynert
nTPM: 47.0
2569 Male, age 61, both hemispheres 60.1
2393 Male, age 80, right hemisphere 43.4
2484 Female, age 94, left hemisphere 42.6
2821 Male, age 75, both hemispheres 41.8
Nucleus of the diagonal band
nTPM: 41.8
1812 Female, age 91, both hemispheres 43.6
2775 Male, age 80, right hemisphere 43.4
1979 Male, age 74, unknown 41.8
2195 Female, age 85, both hemispheres 41.4
2029 Male, age 61, right hemisphere 39.0
Olfactory tubercle
nTPM: 41.2
1846 Male, age 80, right hemisphere 43.6
1998 Female, age 91, both hemispheres 41.2
2856 Male, age 75, right hemisphere 40.9
2487 Female, age 94, left hemisphere 39.1
Putamen
nTPM: 43.3
2482 Female, age 94, left hemisphere 47.0
2647 Male, age 75, left hemisphere 44.8
1937 Female, age 91, right hemisphere 42.8
2466 Female, age 79, unknown 42.8
2489 Female, age 72, unknown 42.2
1838 Male, age 80, right hemisphere 41.8
1829 Male, age 74, unknown 41.6
Septal nuclei
nTPM: 42.3
2199 Male, age 80, right hemisphere 43.8
2059 Female, age 85, both hemispheres 43.7
1960 Male, age 74, unknown 42.9
2394 Male, age 61, left hemisphere 42.6
2031 Female, age 72, unknown 42.0
2629 Female, age 94, right hemisphere 40.9
2009 Female, age 91, both hemispheres 40.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 53.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 47.8
Samples: 246

Max nTPM: 88.9
Min nTPM: 24.6
Std nTPM: 11.6
Median nTPM: 46.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 88.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 86.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 86.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 83.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 81.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 79.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 73.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 70.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 70.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 69.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 67.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.6
Samples: 246

Max nTPM: 152.4
Min nTPM: 22.6
Std nTPM: 15.5
Median nTPM: 44.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 152.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 114.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 103.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 93.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 92.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 91.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 91.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 83.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 81.7
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 80.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 79.4
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Brain - Putamen (basal ganglia)
Average nTPM: 53.5
Samples: 205

Max nTPM: 111.0
Min nTPM: 30.3
Std nTPM: 14.0
Median nTPM: 50.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 111.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 96.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 94.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 94.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 91.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 87.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 86.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 83.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 82.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 82.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 80.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 42.0
FF:10164-103B2 76 years, female 42.0
Globus pallidus
Scaled Tags Per Million: 46.5
FF:10161-103A8 76 years, female 48.0
FF:10175-103C4 60 years, female 44.9
Nucleus accumbens
Scaled Tags Per Million: 34.4
FF:10037-101F1 23-56 years, mixed 34.4
Putamen
Scaled Tags Per Million: 32.9
FF:10176-103C5 60 years, female 32.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.9
Pig sample Sample description nTPM
Caudate
nTPM: 5.4
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 5.8
Sample C Male 6.1
Sample D Male 4.9
Putamen
nTPM: 5.8
Samples: 4

Max nTPM: 7.2
Min nTPM: 4.9
Sample A Female 5.2
Sample B Female 4.9
Sample C Male 7.2
Sample D Male 5.7
Septum
nTPM: 5.9
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.3
Sample A Female 5.5
Sample B Female 5.3
Sample C Male 6.4
Sample D Male 6.2
Ventral pallidum
nTPM: 5.8
Samples: 4

Max nTPM: 7.4
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 6.7
Sample C Male 7.4
Sample D Male 4.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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