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SDR39U1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:56.9 nTPM
HPA:56.9 nTPM
GTEx:65.0 nTPM
FANTOM5:57.6 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:68.5 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044294
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 53.1
2481 Female, age 94, left hemisphere 56.8
1857 Female, age 85, left hemisphere 54.2
2288 Male, age 75, left hemisphere 53.6
2290 Female, age 72, unknown 53.3
1781 Male, age 74, unknown 52.6
2289 Male, age 61, right hemisphere 52.1
1854 Male, age 80, left hemisphere 51.3
2846 Female, age 79, unknown 51.2
Claustrum
nTPM: 51.5
2645 Female, age 72, unknown 53.3
2198 Male, age 80, both hemispheres 52.5
2568 Male, age 61, both hemispheres 52.2
2292 Female, age 85, both hemispheres 51.7
1956 Male, age 74, unknown 51.6
2284 Female, age 91, both hemispheres 51.3
2196 Female, age 79, unknown 50.7
2491 Male, age 75, both hemispheres 50.3
2392 Female, age 94, both hemispheres 49.8
Globus pallidus, externus
nTPM: 56.9
1996 Male, age 80, right hemisphere 62.1
2772 Female, age 79, unknown 58.5
2646 Male, age 61, right hemisphere 57.2
2395 Male, age 75, both hemispheres 53.8
2567 Female, age 72, unknown 53.0
Globus pallidus, internus
nTPM: 56.5
1818 Male, age 74, unknown 57.7
2778 Female, age 91, both hemispheres 57.7
2483 Female, age 94, right hemisphere 57.6
2037 Male, age 80, right hemisphere 57.0
2287 Male, age 75, right hemisphere 55.8
2566 Female, age 72, unknown 55.3
2111 Female, age 85, right hemisphere 54.6
Nucleus accumbens
nTPM: 51.3
2286 Male, age 75, left hemisphere 54.1
1806 Female, age 85, left hemisphere 52.6
1783 Male, age 74, unknown 51.7
2391 Female, age 94, left hemisphere 51.6
2698 Female, age 72, unknown 51.4
2732 Male, age 80, right hemisphere 50.3
1856 Female, age 91, right hemisphere 50.1
2824 Male, age 61, right hemisphere 48.4
Nucleus basalis of Meynert
nTPM: 52.4
2569 Male, age 61, both hemispheres 56.5
2484 Female, age 94, left hemisphere 53.3
2393 Male, age 80, right hemisphere 50.2
2821 Male, age 75, both hemispheres 49.8
Nucleus of the diagonal band
nTPM: 50.4
1812 Female, age 91, both hemispheres 51.5
1979 Male, age 74, unknown 51.3
2775 Male, age 80, right hemisphere 50.8
2195 Female, age 85, both hemispheres 49.7
2029 Male, age 61, right hemisphere 48.7
Olfactory tubercle
nTPM: 49.6
1846 Male, age 80, right hemisphere 51.5
1998 Female, age 91, both hemispheres 50.7
2856 Male, age 75, right hemisphere 48.8
2487 Female, age 94, left hemisphere 47.2
Putamen
nTPM: 52.3
2482 Female, age 94, left hemisphere 54.1
2647 Male, age 75, left hemisphere 53.5
2466 Female, age 79, unknown 53.0
2489 Female, age 72, unknown 52.4
1937 Female, age 91, right hemisphere 51.9
1838 Male, age 80, right hemisphere 51.2
1829 Male, age 74, unknown 50.3
Septal nuclei
nTPM: 51.2
2394 Male, age 61, left hemisphere 53.9
1960 Male, age 74, unknown 51.9
2031 Female, age 72, unknown 51.8
2059 Female, age 85, both hemispheres 51.4
2009 Female, age 91, both hemispheres 50.6
2199 Male, age 80, right hemisphere 50.4
2629 Female, age 94, right hemisphere 48.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 65.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 59.0
Samples: 246

Max nTPM: 120.3
Min nTPM: 25.0
Std nTPM: 14.5
Median nTPM: 57.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 120.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 105.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 104.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 103.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 103.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 102.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 96.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 93.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 91.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 87.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 87.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 56.7
Samples: 246

Max nTPM: 121.1
Min nTPM: 25.1
Std nTPM: 15.9
Median nTPM: 53.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 121.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 115.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 107.2
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 101.1
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 100.2
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 99.0
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 90.9
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 89.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 89.5
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 88.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 86.2
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Brain - Putamen (basal ganglia)
Average nTPM: 65.0
Samples: 205

Max nTPM: 112.7
Min nTPM: 33.2
Std nTPM: 14.2
Median nTPM: 63.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 112.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 110.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 102.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 101.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 100.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 99.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 97.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 94.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 91.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 90.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 90.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 42.8
FF:10164-103B2 76 years, female 42.8
Globus pallidus
Scaled Tags Per Million: 57.6
FF:10175-103C4 60 years, female 61.5
FF:10161-103A8 76 years, female 53.6
Nucleus accumbens
Scaled Tags Per Million: 38.1
FF:10037-101F1 23-56 years, mixed 38.1
Putamen
Scaled Tags Per Million: 39.0
FF:10176-103C5 60 years, female 39.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.8
Pig sample Sample description nTPM
Caudate
nTPM: 14.7
Samples: 4

Max nTPM: 16.8
Min nTPM: 13.1
Sample A Female 13.8
Sample B Female 14.9
Sample C Male 16.8
Sample D Male 13.1
Putamen
nTPM: 15.8
Samples: 4

Max nTPM: 21.3
Min nTPM: 11.3
Sample A Female 14.7
Sample B Female 11.3
Sample C Male 21.3
Sample D Male 15.7
Septum
nTPM: 14.4
Samples: 4

Max nTPM: 16.1
Min nTPM: 13.2
Sample A Female 14.5
Sample B Female 13.2
Sample C Male 16.1
Sample D Male 13.8
Ventral pallidum
nTPM: 13.8
Samples: 4

Max nTPM: 16.8
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 15.0
Sample C Male 16.8
Sample D Male 12.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 68.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 64.4
Samples: 4

Max nTPM: 70.8
Min nTPM: 52.9
Sample A Male 69.7
Sample B Male 70.8
Sample C Female 52.9
Sample D Female 64.1
Septum
nTPM: 62.4
Samples: 4

Max nTPM: 67.7
Min nTPM: 55.8
Sample A Male 63.7
Sample B Male 67.7
Sample C Female 62.3
Sample D Female 55.8
Ventral forebrain
nTPM: 68.5
Samples: 4

Max nTPM: 73.6
Min nTPM: 64.6
Sample A Male 70.8
Sample B Male 64.6
Sample C Female 73.6
Sample D Female 65.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
100144110 Antisense, RP_110407_03_A09, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.6
100144110 Antisense, RP_110407_03_A09, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.