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SDR39U1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:54.0 nTPM
HPA:54.0 nTPM
GTEx:58.6 nTPM
FANTOM5:54.2 Scaled Tags Per Million
Pig:14.5 nTPM
Mouse:59.0 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA044294
Glial cells Medium
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 54.0
Sample id Sample description nTPM
Hippocampus
nTPM: 53.3
2148 Female, age 91, left hemisphere 54.3
2529 Female, age 94, left hemisphere 54.1
1898 Male, age 80, left hemisphere 54.0
2621 Female, age 67, right hemisphere 52.9
1911 Female, age 85, right hemisphere 52.4
1855 Male, age 76, left hemisphere 52.3
Dentate gyrus
nTPM: 53.5
2530 Female, age 94, left hemisphere 57.2
2528 Male, age 74, both hemispheres 56.2
2010 Male, age 76, both hemispheres 55.1
1927 Female, age 91, both hemispheres 51.2
2246 Female, age 85, both hemispheres 51.2
2531 Female, age 67, both hemispheres 50.3
Entorhinal gyrus
nTPM: 51.3
2764 Male, age 80, right hemisphere 52.9
1787 Male, age 76, left hemisphere 51.5
2117 Female, age 91, right hemisphere 51.5
1938 Female, age 85, left hemisphere 51.2
2686 Male, age 75, right hemisphere 51.2
2613 Female, age 94, left hemisphere 49.3
Hippocampus, CA1
nTPM: 52.9
2749 Male, age 80, left hemisphere 56.4
1873 Female, age 85, both hemispheres 53.1
2082 Female, age 91, right hemisphere 52.8
2527 Male, age 74, both hemispheres 52.7
2045 Male, age 76, both hemispheres 49.8
Hippocampus, CA2
nTPM: 54.0
1963 Male, age 80, left hemisphere 57.6
2249 Male, age 74, both hemispheres 55.9
1892 Male, age 76, both hemispheres 53.3
2437 Female, age 94, left hemisphere 53.1
2113 Female, age 91, right hemisphere 52.2
1940 Female, age 85, left hemisphere 51.7
Hippocampus, CA3
nTPM: 52.4
2436 Male, age 74, both hemispheres 53.6
2137 Male, age 80, left hemisphere 53.5
2620 Female, age 94, left hemisphere 52.9
1867 Male, age 76, both hemispheres 52.4
2861 Female, age 67, both hemispheres 51.5
1891 Female, age 85, both hemispheres 50.5
Parahippocampal cortex
nTPM: 51.7
2692 Male, age 74, both hemispheres 53.1
2245 Female, age 91, both hemispheres 52.7
2532 Female, age 72, left hemisphere 52.6
2018 Male, age 76, both hemispheres 52.2
1990 Female, age 91, right hemisphere 52.1
1850 Male, age 80, both hemispheres 51.6
2250 Female, age 67, right hemisphere 51.6
2622 Female, age 67, right hemisphere 51.4
1933 Female, age 85, both hemispheres 50.9
2693 Female, age 94, both hemispheres 49.0
Perirhinal gyrus
nTPM: 51.6
1794 Male, age 80, right hemisphere 54.8
1847 Female, age 91, left hemisphere 52.4
1841 Female, age 85, right hemisphere 51.0
2521 Female, age 94, right hemisphere 49.9
2848 Male, age 76, right hemisphere 49.7
Subiculum
nTPM: 52.3
2619 Male, age 74, both hemispheres 54.0
2438 Female, age 94, left hemisphere 53.6
1977 Female, age 85, both hemispheres 53.4
2729 Female, age 91, right hemisphere 51.8
2042 Male, age 76, both hemispheres 50.7
1901 Male, age 80, both hemispheres 50.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 58.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 58.6
Samples: 197

Max nTPM: 91.3
Min nTPM: 28.8
Std nTPM: 10.9
Median nTPM: 58.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 91.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 87.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 84.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 79.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 79.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 78.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 77.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 77.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 77.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 77.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 76.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 54.2
FF:10169-103B7 60 years, female 59.6
FF:10153-102I9 76 years, female 48.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 14.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 14.5
Samples: 4

Max nTPM: 19.8
Min nTPM: 10.4
Sample A Female 19.8
Sample B Female 13.4
Sample C Male 14.5
Sample D Male 10.4
Entorhinal cortex
nTPM: 11.8
Samples: 4

Max nTPM: 13.0
Min nTPM: 9.8
Sample A Female 11.5
Sample B Female 12.9
Sample C Male 13.0
Sample D Male 9.8
Subiculum
nTPM: 12.9
Samples: 4

Max nTPM: 16.2
Min nTPM: 11.0
Sample A Female 16.2
Sample B Female 11.0
Sample C Male 13.0
Sample D Male 11.4
Ventral hippocampus
nTPM: 14.2
Samples: 4

Max nTPM: 16.5
Min nTPM: 10.6
Sample A Female 14.1
Sample B Female 10.6
Sample C Male 16.5
Sample D Male 15.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 59.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 59.0
Samples: 4

Max nTPM: 61.7
Min nTPM: 56.6
Sample A Male 61.7
Sample B Male 57.9
Sample C Female 56.6
Sample D Female 59.8
Hippocampal formation
nTPM: 50.0
Samples: 4

Max nTPM: 55.4
Min nTPM: 45.1
Sample A Male 53.3
Sample B Male 46.3
Sample C Female 45.1
Sample D Female 55.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
100144110 Antisense, RP_110407_03_A09, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

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