ABOUTMENU
HELP
NEWS
SDR39U1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.9 nTPM
HPA:57.9 nTPM
GTEx:64.8 nTPM
FANTOM5:68.3 Scaled Tags Per Million
Pig:18.0 nTPM
Mouse:68.0 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.3
2586 Male, age 75, left hemisphere 60.2
2019 Male, age 18, unknown 60.0
2828 Female, age 72, unknown 58.3
2411 Female, age 72, unknown 58.2
1827 Male, age 72, unknown 55.5
2666 Male, age 74, left hemisphere 55.0
1830 Male, age 51, unknown 54.7
2219 Male, age 76, both hemispheres 54.5
1833 Male, age 53, unknown 53.7
1870 Female, age 42, unknown 53.2
Dorsal raphe nucleus
nTPM: 56.5
2298 Female, age 72, unknown 58.7
1828 Male, age 53, unknown 57.2
2047 Male, age 72, unknown 56.7
2750 Male, age 76, both hemispheres 55.9
2016 Female, age 72, unknown 53.8
Inferior colliculus
nTPM: 54.4
1848 Female, age 42, unknown 55.6
1890 Male, age 53, unknown 55.2
2097 Female, age 72, unknown 54.2
2849 Male, age 72, unknown 52.7
Median raphe nucleus
nTPM: 52.5
2220 Male, age 76, midline 52.5
Pedunculopontine tegmental nucleus
nTPM: 52.2
2334 Male, age 80, both hemispheres 53.7
1921 Female, age 85, both hemispheres 52.2
2338 Male, age 61, both hemispheres 50.8
Periaquaductal grey, anterior
nTPM: 57.9
2502 Female, age 75, unknown 59.2
1795 Male, age 51, unknown 57.5
1947 Male, age 18, unknown 57.1
Periaquaductal grey, dorsal
nTPM: 53.9
1831 Male, age 72, unknown 55.5
2464 Female, age 72, unknown 54.0
2850 Male, age 76, both hemispheres 53.1
1840 Male, age 53, unknown 53.0
Periaquaductal grey, lateral
nTPM: 54.3
2272 Male, age 74, both hemispheres 55.5
2140 Male, age 76, both hemispheres 55.0
2053 Male, age 18, unknown 52.5
Pretectal area
nTPM: 56.1
2007 Male, age 72, unknown 59.8
1817 Female, age 42, unknown 58.9
2667 Female, age 75, unknown 58.0
1815 Male, age 53, unknown 57.8
1816 Male, age 51, unknown 57.4
1944 Female, age 72, unknown 57.2
2407 Male, age 75, both hemispheres 56.0
2273 Male, age 74, both hemispheres 55.6
2316 Male, age 76, right hemisphere 53.3
2224 Female, age 72, unknown 52.7
2825 Male, age 18, unknown 50.4
Red nucleus
nTPM: 56.8
2785 Male, age 18, unknown 59.1
1865 Male, age 51, unknown 57.9
2725 Female, age 75, unknown 57.5
2584 Male, age 75, left hemisphere 57.2
2769 Male, age 72, unknown 57.1
2227 Male, age 72, unknown 56.7
1821 Female, age 72, unknown 56.4
2503 Female, age 72, unknown 56.4
2823 Male, age 76, right hemisphere 56.4
1904 Male, age 53, unknown 56.2
1954 Female, age 42, unknown 56.2
2588 Male, age 74, left hemisphere 54.6
Substantia nigra
nTPM: 57.2
1916 Female, age 42, unknown 63.9
1851 Male, age 51, unknown 61.2
2699 Male, age 18, unknown 59.0
1889 Female, age 72, unknown 58.3
2665 Male, age 74, both hemispheres 57.1
1941 Male, age 53, unknown 56.9
2583 Male, age 75, right hemisphere 56.7
2590 Female, age 75, unknown 54.4
2241 Male, age 72, unknown 53.8
2409 Female, age 72, unknown 50.4
Superior colliculus
nTPM: 55.7
2087 Female, age 72, unknown 58.2
2261 Male, age 18, unknown 57.4
1796 Male, age 53, unknown 57.2
2587 Male, age 74, left hemisphere 56.1
2664 Male, age 75, both hemispheres 56.1
1995 Male, age 72, unknown 55.5
1913 Female, age 42, unknown 55.0
2668 Female, age 75, unknown 54.5
1839 Male, age 51, unknown 53.7
1895 Male, age 76, right hemisphere 53.1
Ventral tegmental area
nTPM: 57.5
2410 Female, age 72, unknown 62.0
1915 Female, age 42, unknown 59.6
2218 Male, age 76, both hemispheres 57.1
2021 Male, age 53, unknown 56.5
1942 Male, age 51, unknown 54.9
2223 Female, age 72, unknown 54.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.8
Samples: 139

Max nTPM: 110.5
Min nTPM: 35.5
Std nTPM: 12.0
Median nTPM: 64.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 110.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 89.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 88.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 88.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 86.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 86.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 86.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 84.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 83.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 83.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 81.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.3
FF:10158-103A5 76 years, female 68.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.0
Pig sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 21.7
Min nTPM: 14.2
Sample A Female 21.7
Sample B Female 14.2
Sample C Male 17.0
Sample D Male 16.7
Periaqueductal gray
nTPM: 15.4
Samples: 3

Max nTPM: 17.0
Min nTPM: 14.1
Sample B Female 14.1
Sample C Male 17.0
Sample D Male 15.0
Substantia nigra
nTPM: 15.3
Samples: 4

Max nTPM: 21.9
Min nTPM: 11.3
Sample A Female 21.9
Sample B Female 11.3
Sample C Male 15.1
Sample D Male 13.0
Superior colliculi
nTPM: 18.0
Samples: 4

Max nTPM: 20.8
Min nTPM: 14.7
Sample A Female 20.8
Sample B Female 14.7
Sample C Male 18.6
Sample D Male 17.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 68.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.0
Samples: 4

Max nTPM: 74.1
Min nTPM: 61.4
Sample A Male 74.1
Sample B Male 67.7
Sample C Female 61.4
Sample D Female 68.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
100144110 Antisense, RP_110407_03_A09, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.