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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.0 nTPM
HPA:53.0 nTPM
GTEx:31.1 nTPM
FANTOM5:108.9 Scaled Tags Per Million
Pig:72.0 nTPM
Mouse:55.9 nTPM
Allen mouse:4.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.9
2288 Male, age 75, left hemisphere 43.4
2481 Female, age 94, left hemisphere 41.3
1857 Female, age 85, left hemisphere 34.2
2289 Male, age 61, right hemisphere 34.2
2290 Female, age 72, unknown 32.9
2846 Female, age 79, unknown 32.9
1781 Male, age 74, unknown 30.5
1854 Male, age 80, left hemisphere 30.1
Claustrum
nTPM: 33.7
2491 Male, age 75, both hemispheres 38.3
2568 Male, age 61, both hemispheres 37.1
2392 Female, age 94, both hemispheres 35.5
1956 Male, age 74, unknown 33.8
2292 Female, age 85, both hemispheres 33.8
2198 Male, age 80, both hemispheres 33.2
2284 Female, age 91, both hemispheres 31.9
2196 Female, age 79, unknown 30.7
2645 Female, age 72, unknown 29.0
Globus pallidus, externus
nTPM: 53.0
2646 Male, age 61, right hemisphere 56.1
2567 Female, age 72, unknown 54.9
1996 Male, age 80, right hemisphere 52.1
2772 Female, age 79, unknown 51.4
2395 Male, age 75, both hemispheres 50.3
Globus pallidus, internus
nTPM: 50.3
2287 Male, age 75, right hemisphere 56.1
1818 Male, age 74, unknown 53.6
2483 Female, age 94, right hemisphere 53.3
2111 Female, age 85, right hemisphere 48.3
2566 Female, age 72, unknown 48.3
2778 Female, age 91, both hemispheres 47.1
2037 Male, age 80, right hemisphere 45.2
Nucleus accumbens
nTPM: 34.7
2286 Male, age 75, left hemisphere 39.6
2391 Female, age 94, left hemisphere 37.5
2732 Male, age 80, right hemisphere 35.0
2824 Male, age 61, right hemisphere 34.8
1856 Female, age 91, right hemisphere 34.2
1806 Female, age 85, left hemisphere 33.4
2698 Female, age 72, unknown 32.4
1783 Male, age 74, unknown 30.6
Nucleus basalis of Meynert
nTPM: 39.8
2569 Male, age 61, both hemispheres 62.8
2484 Female, age 94, left hemisphere 33.7
2393 Male, age 80, right hemisphere 32.7
2821 Male, age 75, both hemispheres 30.1
Nucleus of the diagonal band
nTPM: 34.0
1812 Female, age 91, both hemispheres 36.4
2775 Male, age 80, right hemisphere 35.9
2195 Female, age 85, both hemispheres 33.3
1979 Male, age 74, unknown 32.8
2029 Male, age 61, right hemisphere 31.4
Olfactory tubercle
nTPM: 32.3
1846 Male, age 80, right hemisphere 36.9
1998 Female, age 91, both hemispheres 33.1
2487 Female, age 94, left hemisphere 31.1
2856 Male, age 75, right hemisphere 28.1
Putamen
nTPM: 35.6
2647 Male, age 75, left hemisphere 41.3
1829 Male, age 74, unknown 40.4
2489 Female, age 72, unknown 37.5
2482 Female, age 94, left hemisphere 36.0
2466 Female, age 79, unknown 35.1
1937 Female, age 91, right hemisphere 32.3
1838 Male, age 80, right hemisphere 26.5
Septal nuclei
nTPM: 33.5
2394 Male, age 61, left hemisphere 37.3
2199 Male, age 80, right hemisphere 34.6
2059 Female, age 85, both hemispheres 34.4
1960 Male, age 74, unknown 33.6
2009 Female, age 91, both hemispheres 32.0
2629 Female, age 94, right hemisphere 31.9
2031 Female, age 72, unknown 30.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 31.1
Samples: 246

Max nTPM: 48.1
Min nTPM: 14.3
Std nTPM: 5.1
Median nTPM: 30.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 48.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 44.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 44.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 42.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 42.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 41.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 41.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 40.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 40.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 40.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 39.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.3
Samples: 246

Max nTPM: 55.8
Min nTPM: 13.1
Std nTPM: 5.7
Median nTPM: 28.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 55.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 46.0
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 44.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 43.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 43.2
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 42.6
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 41.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 40.8
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 39.7
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 39.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 38.6
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Brain - Putamen (basal ganglia)
Average nTPM: 29.1
Samples: 205

Max nTPM: 42.9
Min nTPM: 16.5
Std nTPM: 5.0
Median nTPM: 28.6
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 42.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 42.5
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 42.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 41.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 40.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 40.0
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 39.6
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 39.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 39.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 39.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 39.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 86.0
FF:10164-103B2 76 years, female 86.0
Globus pallidus
Scaled Tags Per Million: 94.7
FF:10161-103A8 76 years, female 108.2
FF:10175-103C4 60 years, female 81.3
Nucleus accumbens
Scaled Tags Per Million: 108.9
FF:10037-101F1 23-56 years, mixed 108.9
Putamen
Scaled Tags Per Million: 76.5
FF:10176-103C5 60 years, female 76.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 72.0
Pig sample Sample description nTPM
Caudate
nTPM: 59.3
Samples: 4

Max nTPM: 69.8
Min nTPM: 50.9
Sample A Female 50.9
Sample B Female 59.2
Sample C Male 69.8
Sample D Male 57.3
Putamen
nTPM: 72.0
Samples: 4

Max nTPM: 90.5
Min nTPM: 55.8
Sample A Female 62.3
Sample B Female 55.8
Sample C Male 90.5
Sample D Male 79.3
Septum
nTPM: 58.7
Samples: 4

Max nTPM: 61.4
Min nTPM: 52.3
Sample A Female 60.0
Sample B Female 60.9
Sample C Male 52.3
Sample D Male 61.4
Ventral pallidum
nTPM: 66.2
Samples: 4

Max nTPM: 75.6
Min nTPM: 54.4
Sample A Female 54.4
Sample B Female 65.5
Sample C Male 69.1
Sample D Male 75.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 55.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 55.9
Samples: 4

Max nTPM: 61.6
Min nTPM: 49.5
Sample A Male 61.6
Sample B Male 59.2
Sample C Female 53.4
Sample D Female 49.5
Septum
nTPM: 35.4
Samples: 4

Max nTPM: 37.7
Min nTPM: 32.3
Sample A Male 37.7
Sample B Male 36.1
Sample C Female 35.5
Sample D Female 32.3
Ventral forebrain
nTPM: 46.8
Samples: 4

Max nTPM: 51.1
Min nTPM: 43.5
Sample A Male 51.1
Sample B Male 45.9
Sample C Female 43.5
Sample D Female 46.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.8
67815944 Antisense, RP_040920_02_B08, Mouse strain C57BL/6J (56 days, male) 9.2
70919782 Antisense, RP_050713_02_A09, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 3.1
67815944 Antisense, RP_040920_02_B08, Mouse strain C57BL/6J (56 days, male) 6.1
70919782 Antisense, RP_050713_02_A09, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.