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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.5 nTPM
HPA:46.5 nTPM
GTEx:33.7 nTPM
FANTOM5:109.3 Scaled Tags Per Million
Pig:70.5 nTPM
Mouse:40.6 nTPM
Allen mouse:4.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 46.5
Sample id Sample description nTPM
Hippocampus
nTPM: 41.9
2148 Female, age 91, left hemisphere 46.8
1898 Male, age 80, left hemisphere 45.1
1911 Female, age 85, right hemisphere 41.8
1855 Male, age 76, left hemisphere 40.3
2621 Female, age 67, right hemisphere 39.6
2529 Female, age 94, left hemisphere 38.1
Dentate gyrus
nTPM: 42.3
2010 Male, age 76, both hemispheres 48.0
1927 Female, age 91, both hemispheres 44.2
2528 Male, age 74, both hemispheres 43.8
2530 Female, age 94, left hemisphere 40.8
2246 Female, age 85, both hemispheres 38.9
2531 Female, age 67, both hemispheres 38.1
Entorhinal gyrus
nTPM: 33.9
2764 Male, age 80, right hemisphere 37.5
2117 Female, age 91, right hemisphere 37.3
1938 Female, age 85, left hemisphere 34.6
1787 Male, age 76, left hemisphere 34.2
2613 Female, age 94, left hemisphere 30.2
2686 Male, age 75, right hemisphere 29.4
Hippocampus, CA1
nTPM: 46.5
2749 Male, age 80, left hemisphere 66.4
1873 Female, age 85, both hemispheres 47.4
2045 Male, age 76, both hemispheres 42.5
2527 Male, age 74, both hemispheres 40.0
2082 Female, age 91, right hemisphere 36.2
Hippocampus, CA2
nTPM: 41.2
1963 Male, age 80, left hemisphere 61.7
1892 Male, age 76, both hemispheres 42.4
2249 Male, age 74, both hemispheres 39.0
2113 Female, age 91, right hemisphere 38.1
1940 Female, age 85, left hemisphere 35.7
2437 Female, age 94, left hemisphere 30.4
Hippocampus, CA3
nTPM: 43.0
2137 Male, age 80, left hemisphere 56.0
2620 Female, age 94, left hemisphere 49.9
2861 Female, age 67, both hemispheres 41.6
1891 Female, age 85, both hemispheres 40.2
1867 Male, age 76, both hemispheres 38.6
2436 Male, age 74, both hemispheres 31.5
Parahippocampal cortex
nTPM: 33.4
2018 Male, age 76, both hemispheres 38.1
1850 Male, age 80, both hemispheres 36.7
2692 Male, age 74, both hemispheres 36.4
2245 Female, age 91, both hemispheres 35.8
1933 Female, age 85, both hemispheres 35.1
1990 Female, age 91, right hemisphere 32.1
2532 Female, age 72, left hemisphere 31.4
2693 Female, age 94, both hemispheres 30.5
2622 Female, age 67, right hemisphere 29.5
2250 Female, age 67, right hemisphere 28.7
Perirhinal gyrus
nTPM: 33.8
1847 Female, age 91, left hemisphere 36.3
1794 Male, age 80, right hemisphere 36.0
2521 Female, age 94, right hemisphere 33.0
2848 Male, age 76, right hemisphere 33.0
1841 Female, age 85, right hemisphere 30.6
Subiculum
nTPM: 37.6
2729 Female, age 91, right hemisphere 42.2
2042 Male, age 76, both hemispheres 40.0
1901 Male, age 80, both hemispheres 39.0
2619 Male, age 74, both hemispheres 37.6
1977 Female, age 85, both hemispheres 35.2
2438 Female, age 94, left hemisphere 31.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.7
Samples: 197

Max nTPM: 47.6
Min nTPM: 15.7
Std nTPM: 6.4
Median nTPM: 33.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 47.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 47.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 47.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 46.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 46.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 45.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 45.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 45.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 45.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 44.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 44.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 109.3
FF:10153-102I9 76 years, female 112.0
FF:10169-103B7 60 years, female 106.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 70.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 70.5
Samples: 4

Max nTPM: 77.8
Min nTPM: 63.1
Sample A Female 77.8
Sample B Female 73.5
Sample C Male 67.7
Sample D Male 63.1
Entorhinal cortex
nTPM: 55.2
Samples: 4

Max nTPM: 57.8
Min nTPM: 51.6
Sample A Female 51.6
Sample B Female 57.6
Sample C Male 57.8
Sample D Male 53.8
Subiculum
nTPM: 59.6
Samples: 4

Max nTPM: 63.9
Min nTPM: 56.0
Sample A Female 63.9
Sample B Female 59.0
Sample C Male 59.3
Sample D Male 56.0
Ventral hippocampus
nTPM: 64.3
Samples: 4

Max nTPM: 75.8
Min nTPM: 52.7
Sample A Female 59.3
Sample B Female 52.7
Sample C Male 69.5
Sample D Male 75.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 40.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 40.6
Samples: 4

Max nTPM: 46.2
Min nTPM: 35.7
Sample A Male 40.6
Sample B Male 46.2
Sample C Female 35.7
Sample D Female 40.0
Hippocampal formation
nTPM: 36.2
Samples: 4

Max nTPM: 41.2
Min nTPM: 33.8
Sample A Male 41.2
Sample B Male 35.7
Sample C Female 34.2
Sample D Female 33.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.3
67815944 Antisense, RP_040920_02_B08, Mouse strain C57BL/6J (56 days, male) 7.8
70919782 Antisense, RP_050713_02_A09, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

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