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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.2 nTPM
HPA:48.2 nTPM
GTEx:36.6 nTPM
FANTOM5:115.8 Scaled Tags Per Million
Pig:67.8 nTPM
Mouse:40.3 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.9
2019 Male, age 18, unknown 55.3
2586 Male, age 75, left hemisphere 51.5
2828 Female, age 72, unknown 46.9
2411 Female, age 72, unknown 44.7
1870 Female, age 42, unknown 42.9
1833 Male, age 53, unknown 42.8
1827 Male, age 72, unknown 41.2
1830 Male, age 51, unknown 40.8
2666 Male, age 74, left hemisphere 38.3
2219 Male, age 76, both hemispheres 34.7
Dorsal raphe nucleus
nTPM: 40.1
2016 Female, age 72, unknown 46.3
1828 Male, age 53, unknown 45.6
2298 Female, age 72, unknown 39.0
2047 Male, age 72, unknown 35.9
2750 Male, age 76, both hemispheres 33.5
Inferior colliculus
nTPM: 40.6
2097 Female, age 72, unknown 42.2
1890 Male, age 53, unknown 41.1
2849 Male, age 72, unknown 40.0
1848 Female, age 42, unknown 39.0
Median raphe nucleus
nTPM: 30.7
2220 Male, age 76, midline 30.7
Pedunculopontine tegmental nucleus
nTPM: 29.8
1921 Female, age 85, both hemispheres 37.0
2334 Male, age 80, both hemispheres 33.0
2338 Male, age 61, both hemispheres 19.4
Periaquaductal grey, anterior
nTPM: 42.0
2502 Female, age 75, unknown 56.4
1795 Male, age 51, unknown 39.9
1947 Male, age 18, unknown 29.8
Periaquaductal grey, dorsal
nTPM: 41.7
2464 Female, age 72, unknown 44.4
1831 Male, age 72, unknown 43.2
1840 Male, age 53, unknown 39.7
2850 Male, age 76, both hemispheres 39.7
Periaquaductal grey, lateral
nTPM: 42.0
2140 Male, age 76, both hemispheres 45.6
2053 Male, age 18, unknown 40.4
2272 Male, age 74, both hemispheres 40.1
Pretectal area
nTPM: 46.7
2667 Female, age 75, unknown 57.6
1816 Male, age 51, unknown 54.3
1944 Female, age 72, unknown 52.1
1815 Male, age 53, unknown 48.7
1817 Female, age 42, unknown 48.2
2007 Male, age 72, unknown 48.0
2273 Male, age 74, both hemispheres 45.3
2407 Male, age 75, both hemispheres 44.3
2316 Male, age 76, right hemisphere 39.6
2825 Male, age 18, unknown 38.5
2224 Female, age 72, unknown 37.7
Red nucleus
nTPM: 48.2
2785 Male, age 18, unknown 55.3
2503 Female, age 72, unknown 51.3
1904 Male, age 53, unknown 51.1
2769 Male, age 72, unknown 50.9
2588 Male, age 74, left hemisphere 50.6
1821 Female, age 72, unknown 50.5
1954 Female, age 42, unknown 50.5
2227 Male, age 72, unknown 50.4
1865 Male, age 51, unknown 49.7
2823 Male, age 76, right hemisphere 41.8
2725 Female, age 75, unknown 37.9
2584 Male, age 75, left hemisphere 37.7
Substantia nigra
nTPM: 42.0
2583 Male, age 75, right hemisphere 48.7
1889 Female, age 72, unknown 46.8
2409 Female, age 72, unknown 43.3
2699 Male, age 18, unknown 43.3
1851 Male, age 51, unknown 43.0
1916 Female, age 42, unknown 41.9
1941 Male, age 53, unknown 40.4
2665 Male, age 74, both hemispheres 38.1
2590 Female, age 75, unknown 37.8
2241 Male, age 72, unknown 36.5
Superior colliculus
nTPM: 44.5
2664 Male, age 75, both hemispheres 52.2
1995 Male, age 72, unknown 49.7
2087 Female, age 72, unknown 49.0
2261 Male, age 18, unknown 49.0
1913 Female, age 42, unknown 45.4
2587 Male, age 74, left hemisphere 44.8
1796 Male, age 53, unknown 41.3
1839 Male, age 51, unknown 39.9
1895 Male, age 76, right hemisphere 37.8
2668 Female, age 75, unknown 35.5
Ventral tegmental area
nTPM: 40.0
2410 Female, age 72, unknown 49.8
1915 Female, age 42, unknown 39.6
2223 Female, age 72, unknown 39.3
1942 Male, age 51, unknown 38.3
2218 Male, age 76, both hemispheres 36.7
2021 Male, age 53, unknown 36.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.6
Samples: 139

Max nTPM: 54.1
Min nTPM: 19.2
Std nTPM: 7.0
Median nTPM: 36.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 54.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 52.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 52.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 52.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 50.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 50.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 49.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 49.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 49.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 48.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 47.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.8
FF:10158-103A5 76 years, female 115.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 67.8
Pig sample Sample description nTPM
Midbrain
nTPM: 67.8
Samples: 4

Max nTPM: 92.7
Min nTPM: 49.6
Sample A Female 49.6
Sample B Female 64.6
Sample C Male 92.7
Sample D Male 64.3
Periaqueductal gray
nTPM: 62.8
Samples: 3

Max nTPM: 65.3
Min nTPM: 60.5
Sample B Female 65.3
Sample C Male 60.5
Sample D Male 62.7
Substantia nigra
nTPM: 56.8
Samples: 4

Max nTPM: 69.4
Min nTPM: 46.8
Sample A Female 54.6
Sample B Female 46.8
Sample C Male 56.3
Sample D Male 69.4
Superior colliculi
nTPM: 63.8
Samples: 4

Max nTPM: 78.9
Min nTPM: 43.1
Sample A Female 57.0
Sample B Female 43.1
Sample C Male 78.9
Sample D Male 76.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.4
Samples: 4

Max nTPM: 42.3
Min nTPM: 38.9
Sample A Male 39.5
Sample B Male 38.9
Sample C Female 40.7
Sample D Female 42.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
67815944 Antisense, RP_040920_02_B08, Mouse strain C57BL/6J (56 days, male) 1.9
70919782 Antisense, RP_050713_02_A09, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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